View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21559_low_7 (Length: 362)
Name: NF21559_low_7
Description: NF21559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21559_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 23934538 - 23934185
Alignment:
| Q |
1 |
attgctctagagctcaacttaggcaagaaattgctgattccgaggcagaacttacagctatctgttcagaaatgggagagcgacctgtacatagtagaca |
100 |
Q |
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| T |
23934538 |
attgctctagagctcaacttaggcaagaaattgctgattccgaggcagaacttacagctatctgttcagaaatgggagagcgacctgtacatagtagaca |
23934439 |
T |
|
| Q |
101 |
ggttcgacattttatgtattactagtttcttgattactgttttacggcatgtatgtatctatatactgctcgatggagaaaatagtt---gtttaataca |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
23934438 |
ggttcgacattttatgtattactagtttcttgattactgttttacggcatgtatgtatctatatactgctcgacggagaaaatagtttaagtttaataca |
23934339 |
T |
|
| Q |
198 |
acagtgtttaatgtcatatttgtgtaacaataatttggaatgatgatataatattcctagcattattagaagcttatacacaaatttgtcaaagtttata |
297 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23934338 |
acagtgtttaatgtcatatttgtgtgacaataatttggaatgatgatataatattcctagcattattagaagcttatacacaaatttgtcaaagtttata |
23934239 |
T |
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| Q |
298 |
gttctgttggttgttactgtcgaattatgcaaccgagattatttgttcattcat |
351 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23934238 |
gttctgttcgttgttactgtcgaattatgcaatcgagattatttgttcattcat |
23934185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 29707929 - 29707831
Alignment:
| Q |
1 |
attgctctagagctcaacttaggcaagaaattgctgattccgaggcagaacttacagctatctgttcagaaatgggagagcgacctgtacatagtagaca |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
29707929 |
attgctctagagctcaacttaggcaacaaattgctgattccgaggca-aacttatagctatttgttctgaaatgggagagcgacctgtacatagtagaca |
29707831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 34234806 - 34234904
Alignment:
| Q |
6 |
tctagagctcaacttaggcaagaaattgctgattccgaggcagaacttacagctatctgttcagaaatgggagagcgacctgtacatagtagacaggtt |
104 |
Q |
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|||||||||||||| || || ||||||||||| ||||| |||||| ||||||||||||| | |||||| |||||||| || || | |||||||||| |
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| T |
34234806 |
tctagagctcaactaagacagttaattgctgattgtgaggctgaacttgcagctatctgttctgcaatgggcgagcgaccagtgcacattagacaggtt |
34234904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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