View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21559_low_9 (Length: 258)

Name: NF21559_low_9
Description: NF21559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21559_low_9
NF21559_low_9
[»] chr6 (1 HSPs)
chr6 (8-239)||(23934584-23934815)
[»] chr4 (1 HSPs)
chr4 (8-117)||(29707975-29708083)
[»] chr3 (3 HSPs)
chr3 (141-239)||(44162927-44163025)
chr3 (141-239)||(44189047-44189145)
chr3 (141-239)||(6095221-6095319)
[»] chr2 (2 HSPs)
chr2 (141-239)||(32719191-32719289)
chr2 (141-239)||(32728176-32728274)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 23934584 - 23934815
Alignment:
Q  8 caagctgaaacaacatcctatctttttcagactcagactcaccaacttcatgccatattatctagtttcgaaaaataaacgaagacaaacgataagaatt 107  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23934584 caagctcatacaacatcctatctttttcagactcagactcaccaacttcatgccatattatctagttttgaaaaataaacgaagacaaacgataagaatt 23934683  T
Q  108 tctccgaagtttaccagatattcattgaaattgcagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23934684 tctccgaagtttaccagatattcattgaaattgcagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaa 23934783  T
Q  208 gaggatgatcattatgaggtttatgcattttg 239  Q
    ||||||||||||||||||||||||||||||||    
T  23934784 gaggatgatcattatgaggtttatgcattttg 23934815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 29707975 - 29708083
Alignment:
Q  8 caagctgaaacaacatcctatctttttcagactcagactcaccaacttcatgccatattatctagtttcgaaaaataaacgaagacaaacgataagaatt 107  Q
    |||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  29707975 caagctcatacaccatcctatcttcttcagactcagactcaccaacttcatgccatattatctag-ttcgaaaaataaacgaagacaaacaataagaatt 29708073  T
Q  108 tctccgaagt 117  Q
    ||||| ||||    
T  29708074 tctccaaagt 29708083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 44162927 - 44163025
Alignment:
Q  141 cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttg 239  Q
    |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||    
T  44162927 cagataaagttggtttttacctgaagttcttgaagaagtgaaccacatgttgtttcagcttgaggaaaaggatgatcgttatgaggtttatgaattttg 44163025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 44189047 - 44189145
Alignment:
Q  141 cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttg 239  Q
    |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||    
T  44189047 cagataaagttggtttttacctgaagttcttgaagaagtgaaccacatgttgtttcagcttgaggaaaaggatgatcgttatgaggtttatgaattttg 44189145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 6095221 - 6095319
Alignment:
Q  141 cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttg 239  Q
    |||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||    
T  6095221 cagataaagttggtttttacttgaagttcttgaagaagtgaaccacatgttgtttcagcttgaggaaaaggatgatcgttatgaggtttatgaattttg 6095319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 32719191 - 32719289
Alignment:
Q  141 cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttg 239  Q
    |||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||    
T  32719191 cagataaagttggtttttacctgaagttcttgaagaggtgaaccacatgttgtttcagcttgaggaaaaggatgatcgttatgaggtttatgaattttg 32719289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 32728176 - 32728274
Alignment:
Q  141 cagagaaagttggtttgtacctgaagttcttgaagaagtgatccacatgttgtttcagcttgcggaagaggatgatcattatgaggtttatgcattttg 239  Q
    |||| |||||| |||| ||||||||||||||||||| |||| |||||||||||||||||||| |||| ||||||||| ||||| |||||||| ||||||    
T  32728176 cagataaagttcgtttttacctgaagttcttgaagaggtgaaccacatgttgtttcagcttgaggaataggatgatcgttatggggtttatgaattttg 32728274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University