View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2155_high_6 (Length: 233)

Name: NF2155_high_6
Description: NF2155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2155_high_6
NF2155_high_6
[»] chr3 (3 HSPs)
chr3 (14-233)||(33157582-33157800)
chr3 (92-170)||(38216131-38216209)
chr3 (67-169)||(43071745-43071847)
[»] chr4 (1 HSPs)
chr4 (65-168)||(15562134-15562239)
[»] chr2 (1 HSPs)
chr2 (85-173)||(1602681-1602770)
[»] chr6 (2 HSPs)
chr6 (92-170)||(4838005-4838083)
chr6 (94-156)||(29394565-29394627)
[»] chr8 (2 HSPs)
chr8 (67-170)||(31421187-31421290)
chr8 (95-170)||(24587140-24587215)
[»] chr5 (1 HSPs)
chr5 (67-170)||(5548111-5548216)
[»] chr7 (1 HSPs)
chr7 (94-170)||(29366553-29366629)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 33157800 - 33157582
Alignment:
Q  14 tgaaaaagatgctattctatttcttttggtttaatcgcagttttgatgcatcgatttttattattttatgaaattgatccctattttaaaatttgacact 113  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33157800 tgaaaaagatgttactctatttcttttggtttaatcgcagttttgatgcatcgatttttattattttatgaaattgatccctattttaaaatttgacact 33157701  T
Q  114 tttggttctctcatcaaatatttagtgtaaaatacaatgatatgatatgttttaaattaaannnnnnnagagaatgtttttagaatttcaatgatattga 213  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||| ||    
T  33157700 tttggttctctcatcaaatatttagtctaaaatacaatgatatgatatgttttaaattaaattttttaa-agaatgtttttagaatttcaatgatatcga 33157602  T
Q  214 tcttttctcgtcattagatc 233  Q
    ||||||||||| || |||||    
T  33157601 tcttttctcgttatcagatc 33157582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 38216131 - 38216209
Alignment:
Q  92 ccctattttaaaatttgacacttttggtt-ctctcatcaaatatttagtgtaaaatacaatgatatgatatgttttaaat 170  Q
    ||||||||||||||| |||| |||||||  |||| ||||||||||| || |||||||   ||||||||||||||||||||    
T  38216131 ccctattttaaaattcgacaattttggtcgctct-atcaaatattttgtctaaaatattgtgatatgatatgttttaaat 38216209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 43071847 - 43071745
Alignment:
Q  67 atttttattattttatgaaattgatcc--ctattttaaaatttgacacttttggttctctcatcaaatatttagtgtaaaatacaatgatatgatatgtt 164  Q
    |||||||| ||||| |||||||| |||  ||||||||||||| |||| ||||||| ||   ||||||||||  || |||||||   ||||||||||||||    
T  43071847 atttttatcattttgtgaaattggtccatctattttaaaattcgacaattttggtccttctatcaaatatt--gtctaaaatattgtgatatgatatgtt 43071750  T
Q  165 ttaaa 169  Q
    |||||    
T  43071749 ttaaa 43071745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 15562134 - 15562239
Alignment:
Q  65 cgatttttattattttatgaaattgat--ccctattttaaaatttgacacttttggt-tctctcatcaaatatttagtgtaaaatacaatgatatgatat 161  Q
    |||||||||| ||||||||||||||||  |||||||||||||||||||| |||||||  |||| ||| |||| || || ||||||||| |||||| | ||    
T  15562134 cgatttttatcattttatgaaattgatccccctattttaaaatttgacagttttggtccctct-atctaataatttgtctaaaatacagtgatataacat 15562232  T
Q  162 gttttaa 168  Q
    |||||||    
T  15562233 gttttaa 15562239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 1602681 - 1602770
Alignment:
Q  85 aattgatcccta-ttttaaaatttgacacttttggttctctcatcaaatatttagtgtaaaatacaatgatatgatatgttttaaattaa 173  Q
    |||||||||||  ||||||||||||||| ||||||| |   |||||||||||| || |||||||   |||||||||||||||| ||||||    
T  1602681 aattgatcccttgttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgatatgatatgttttcaattaa 1602770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 4838083 - 4838005
Alignment:
Q  92 ccctattttaaaatttgacacttttggttc-tctcatcaaatatttagtgtaaaatacaatgatatgatatgttttaaat 170  Q
    ||||||||||||| |||||| ||||||| | ||| ||||||||||| || |||||||   ||||||||||||||||||||    
T  4838083 ccctattttaaaagttgacaattttggtccatct-atcaaatattttgtttaaaatattgtgatatgatatgttttaaat 4838005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 29394627 - 29394565
Alignment:
Q  94 ctattttaaaatttgacacttttggttctct-catcaaatatttagtgtaaaatacaatgatat 156  Q
    |||||||||||||||||| ||| || ||||| ||||||||||||||| ||||||| ||||||||    
T  29394627 ctattttaaaatttgacaattt-ggatctctacatcaaatatttagtttaaaatataatgatat 29394565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 31421290 - 31421187
Alignment:
Q  67 atttttattattttatgaaattgatc--cctattttaaaatttgacacttttggttctctcatcaaatatttagtgtaaaatacaatgatatgatatgtt 164  Q
    ||||||||||||||||||||||||||  | ||||||||||||||| | ||||   ||| |||||||||||||  | ||||||| | | |||||| |||||    
T  31421290 atttttattattttatgaaattgatcctcttattttaaaatttgataatttt-aatct-tcatcaaatatttgatctaaaatatagtaatatgacatgtt 31421193  T
Q  165 ttaaat 170  Q
    ||||||    
T  31421192 ttaaat 31421187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 24587140 - 24587215
Alignment:
Q  95 tattttaaaatttgacacttttggttctctc-atcaaatatttagtgtaaaatacaatgatatgatatgttttaaat 170  Q
    |||||||||||| |||| ||||||| | ||| ||||||||||| || ||||||   |||||||||||||||||||||    
T  24587140 tattttaaaattcgacaattttggtcc-ctctatcaaatattttgtctaaaatgttatgatatgatatgttttaaat 24587215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 5548111 - 5548216
Alignment:
Q  67 atttttattattttatgaaattgatccct--attttaaaatttgacacttttggttctctcatcaaatatttagtgtaaaatacaatgatatgatatgtt 164  Q
    |||||||||||||| | |||||| |||||  ||||||||||| |||| ||||||| |  | ||||||||||| || |||||||    ||| |||||||||    
T  5548111 atttttattattttgttaaattggtccctctattttaaaattcgacaattttggtccctttatcaaatattttgtctaaaatattgagatgtgatatgtt 5548210  T
Q  165 ttaaat 170  Q
    ||||||    
T  5548211 ttaaat 5548216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 29366629 - 29366553
Alignment:
Q  94 ctattttaaaatttgacacttttggttctctcatcaaatatttagtgtaaaatacaatgatatgatatgttttaaat 170  Q
    ||||||||| |||||||| |||||||  |   ||||||||||| || |||||||   ||||||||||||||||||||    
T  29366629 ctattttaatatttgacaattttggtcattctatcaaatattttgtctaaaatattgtgatatgatatgttttaaat 29366553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University