View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2155_low_1 (Length: 713)
Name: NF2155_low_1
Description: NF2155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2155_low_1 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
| [»] scaffold0813 (1 HSPs) |
| | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
| [»] scaffold0468 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 607; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 16 - 626
Target Start/End: Original strand, 18935392 - 18936002
Alignment:
| Q |
16 |
aaaattgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18935392 |
aaaattgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaa |
18935491 |
T |
|
| Q |
116 |
gatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaatga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18935492 |
gatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaatga |
18935591 |
T |
|
| Q |
216 |
tatcttgtcattagctaaaacatttgcaggcacaccagctcttgaactcttggatgaacaaaatgatagtttctatggtctaccatctgttcttaaagat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18935592 |
tatcttgtcattagctaaaacatttgcaggcacaccagctcttgaactcttggatgaacaaaatgatagtttctatggtctaccatctgttcttaaagat |
18935691 |
T |
|
| Q |
316 |
cttcagaatcttcaacgtctttggttgaaatgtgagtcagaagctcaactaaatcaagctgttgcaagtattctggataacttacatgccaaaagttgtg |
415 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18935692 |
cttcagaatcttcaacgtctttggttggaatgtgagtcagaagctcaactaaatcaagctgttgcaagtattctggataacttacatgccaaaagttgtg |
18935791 |
T |
|
| Q |
416 |
aggaattggaagcaatgcaaaacacagcacaatcctcaaattttgtgacttcagcatccactcattgttgcagtcaagttcgcggttcaagctcacaaaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18935792 |
aggaattggaagcaatgcaaaacacagcacaatcctcaaattttgtgacttcagcatccactcattgttgcagtcaagttcgcggttcaagctcacaaaa |
18935891 |
T |
|
| Q |
516 |
ttccttgacatcacttttggttcaaattggaatgaactgtcatgtcgttaatacgctcaaagaaaacattttccaggttctctctttctccctttcttat |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18935892 |
ttccttgacatcacttttggttcaaattggaatgaactgtcatgtcgttaatacgctcaaagaaaacattttccaggttctctctttctccctttcttat |
18935991 |
T |
|
| Q |
616 |
ttgacagttgc |
626 |
Q |
| |
|
||||||||||| |
|
|
| T |
18935992 |
ttgacagttgc |
18936002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 16 - 626
Target Start/End: Complemental strand, 34724661 - 34724051
Alignment:
| Q |
16 |
aaaattgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||||| |||||||||| || || ||||||||||||| |
|
|
| T |
34724661 |
aaaattgacaagttggaagaggacatagaacaaatgacttctttgaccattctagttgcggataagacttctgtaacaagggttccatttgcagtagtaa |
34724562 |
T |
|
| Q |
116 |
gatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaatga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34724561 |
gatcaaaaagcattggatttatttcactttgtggatttgaaggatttgcacgtaatgtgttcccttcaattattcagtcttggatgtctccaacaaatgg |
34724462 |
T |
|
| Q |
216 |
tatcttgtcattagctaaaacatttgcaggcacaccagctcttgaactcttggatgaacaaaatgatagtttctatggtctaccatctgttcttaaagat |
315 |
Q |
| |
|
||||||| | ||| | ||||||||||||||||| || |||||||| |||| ||||||||| || ||||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
34724461 |
tatcttgcccctagttcaaacatttgcaggcacatcatctcttgaattctttgatgaacaagataatagtttctatggtctaccgtcttttcataaagat |
34724362 |
T |
|
| Q |
316 |
cttcagaatcttcaacgtctttggttgaaatgtgagtcagaagctcaactaaatcaagctgttgcaagtattctggataacttacatgccaaaagttgtg |
415 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||| ||||||||||||||||||||||| || | |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34724361 |
cttccgaatcttcaacgcctttggtttaaatgcaagtcagaagctcaactaaatcaaactctagcaagtattctggataacttacataccaaaagttgtg |
34724262 |
T |
|
| Q |
416 |
aggaattggaagcaatgcaaaacacagcacaatcctcaaattttgtgacttcagcatccactcattgttgcagtcaagttcgcggttcaagctcacaaaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
34724261 |
aggaattggaagcaatgcaaaacacagcacaatcctcaaagtttgtgacttcagcatccactcattgttgcagtcaagttcccagttcaagctcacaaaa |
34724162 |
T |
|
| Q |
516 |
ttccttgacatcacttttggttcaaattggaatgaactgtcatgtcgttaatacgctcaaagaaaacattttccaggttctctctttctccctttcttat |
615 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| | |||| |||||| || ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34724161 |
ttccttgacatcactttttattcaaattggaatgaactgccgtgtcactaatactcttaaagaaaacattttccaggttctttctttctccctttcttac |
34724062 |
T |
|
| Q |
616 |
ttgacagttgc |
626 |
Q |
| |
|
||||||||||| |
|
|
| T |
34724061 |
ttgacagttgc |
34724051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 36213901 - 36213706
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||||| |||||| || |||| |||| ||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
36213901 |
attgacaaattggaagaggacatggaacagatggaatctttaaccaccttgattgcaaataacactgcaataacaagagtgccattttcagtagtaagat |
36213802 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaatg |
214 |
Q |
| |
|
| |||||||| | | ||| || |||| || | ||||||||| ||| | |||||||||| || || ||| |||||||||||| |||||||||| |
|
|
| T |
36213801 |
ctaaaagcatcgcttatatatctttgtgcggctatgaaggattctcacatgatgtgtttccatctatcatttggtcttggatgtcaccaacaaatg |
36213706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 20)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 7885466 - 7885095
Alignment:
| Q |
16 |
aaaattgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaa |
115 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||| |||||| |||||| ||||||||||| | |||||| | ||||||||||||||||||||||||| |
|
|
| T |
7885466 |
aaaattgacaagttagaagaggatatagaacaaatgaaatctttaaccaccttggttgcggatgacactgctatcacaagagtgccctttgcagtagtaa |
7885367 |
T |
|
| Q |
116 |
gatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaatga |
215 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||| | | |||||| ||||||| ||||||||||| ||||||||||||||| |||||||||||||| | |
|
|
| T |
7885366 |
gatcaaaaagcattgcatttatttctctatgtggttataaaggatctgcacgtagagtgtttccttctattattcagtcttggctgtctccaacaaataa |
7885267 |
T |
|
| Q |
216 |
tatcttgtcattagctaaaacatttgcaggcacaccagctcttgaactcttggatgaacaaaatgatagtttctatggtctaccatctgttcttaaagat |
315 |
Q |
| |
|
|| | || ||| | |||||| |||||| || | || ||| || | |||||||||||| ||||||||||| ||||| |||| || | ||||| |
|
|
| T |
7885266 |
cattctatccctagttcaaacatctgcaggaactttatgtcgtgatttcatcgatgaacaaaataatagtttctattgtctatcatccattttagaagat |
7885167 |
T |
|
| Q |
316 |
cttcagaatcttcaacgtctttggttgaaatgtgagtcagaagctcaactaaatcaagctgttgcaagtatt |
387 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||| ||| |||||||||| |||||| |||| ||||||||| |
|
|
| T |
7885166 |
cttcagaatactcaacgtctttgggtgaaatgtgattcacaagctcaacttaatcaaactgtagcaagtatt |
7885095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 4344655 - 4344850
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||| |||||| ||||| ||| |||| |||| |||||| |||||| ||| |||||| |||||||||| | |
|
|
| T |
4344655 |
attgacaagttggaagaggacttggaacaaatggaatctttaaccactctgattgcaaataacactgctataacaaaagtacccttttcagtagtaaggt |
4344754 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaatg |
214 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||| || ||| |||||||||||| |||||||||| |
|
|
| T |
4344755 |
caaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtcaccaacaaatg |
4344850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 4320691 - 4320502
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||| |||||| ||||||||| |||| |||| |||| | |||||| ||| |||||| || ||||||| | |
|
|
| T |
4320691 |
attgacaagttggaagaggacttggaacaaatggaatctttaaccaccctgattgcaaataatactggtataacaaaagttcccttttcattagtaaggt |
4320592 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaa |
208 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||||||| || ||| |||||||||||| |||| |
|
|
| T |
4320591 |
caaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttggtcttggatgtcaccaa |
4320502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 4124011 - 4123817
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||| |||||| ||||| ||| |||| |||| |||||| |||||| |||||||||| | |||||||| | |
|
|
| T |
4124011 |
attgacaagttggaagaggagttggaacaaatggaatctttaaccactctgattgcaaataatactgctataacaaaagtgcccttttcggtagtaaggt |
4123912 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||| | ||| ||||||||||||| || ||| ||||||||||| ||||||||| |
|
|
| T |
4123911 |
caaaaagcattggatttatttctctgtgtggatatgaaggattctctcgtgatgtgtttccttctatcatttcgtcttggatgttaccaacaaat |
4123817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 4361086 - 4361281
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||| ||||||||||||| | ||||| ||| |||||| ||||| ||| |||| |||| |||| | |||||| ||| |||||| || | ||||||| |
|
|
| T |
4361086 |
attgacacgttggaagaggacttggaacaaatggaatctttaaccactctgattgcaaataacactggtataacaaaagtacccttttcaattgtaagat |
4361185 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaatg |
214 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||| || ||| |||||||||||| |||||||||| |
|
|
| T |
4361186 |
caaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaaatg |
4361281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 6621579 - 6621395
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||| ||||| |||||| | ||||||||| ||| ||||| ||| || ||||||||||||||||| |||||| ||| |||||| || ||||| ||| |
|
|
| T |
6621579 |
attgacaaattggaggaggacttggaacagatggaatcattgacaaccttgattgcggataagactgctataacaaaagttcccttttcaatagtacgat |
6621480 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtc |
203 |
Q |
| |
|
| |||| |||||||| |||||| | ||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
6621479 |
ctaaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgtttccttcacttattcgctcttggatgtc |
6621395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 6498598 - 6498404
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||| ||||| |||||| | ||||||||| ||| ||||| ||| || ||||||||||||||||| |||||| ||| |||||| || ||||||||| |
|
|
| T |
6498598 |
attgacaaattggaggaggacgtggaacagatggaatcattgacaaccttgattgcggataagactgctataacaaaagttcccttttcaatagtaagat |
6498499 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||||||||||||| ||||| | |||||||| ||||||| ||||| |||| |||||||| | |||| |||||||||||| ||| ||||| |
|
|
| T |
6498498 |
caaaaagcattggatacatttctttaggtggatttaaaggattttcacgtgatgtatttccttctctcattcggtcttggatgtcaccatcaaat |
6498404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 6752969 - 6753163
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||| ||||| |||||| | ||||||||| ||| |||| ||| || ||||||||||||||||| |||||| |||||||||| || ||||||||| |
|
|
| T |
6752969 |
attgacaaattggaggaggacttggaacagatggaatcattgattaccttgattgcggataagactgctataacaaaagtgcccttttcaatagtaagat |
6753068 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||||||||||| |||||| | |||| ||||||||||| ||||| |||| || ||||| | |||| ||||||||| || ||| ||||| |
|
|
| T |
6753069 |
tgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattcccttctctcattcggtcttggatatcgccatcaaat |
6753163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 4335354 - 4335536
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||| |||||| ||||| || | || ||||| |||| | |||||| |||||||||| ||||||||| | |
|
|
| T |
4335354 |
attgacaagttggaagaggacttggaacaaatggaatctttaaccactctcatggcagataacactggtataacaaaagtgcccttttcagtagtaaagt |
4335453 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatg |
201 |
Q |
| |
|
||||||||||||| | ||| || ||||||| | ||||||||| | ||| ||||||||||||| || ||| |||||||||| |
|
|
| T |
4335454 |
caaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccttctataatttggtcttggatg |
4335536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 6651076 - 6651218
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||| ||||| |||||| | ||||||||| ||| |||| ||| || ||||||||||||||||| |||||| |||||| ||| || ||||||||| |
|
|
| T |
6651076 |
attgacaaattggaggaggacttggaacagatggaatcattgaaaaccttgattgcggataagactgctataacaaaagtgccgttttcaatagtaagat |
6651175 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggatt |
161 |
Q |
| |
|
|| || |||||||| |||||| || ||||| ||||||||||| |
|
|
| T |
6651176 |
taagaaacattggatatatttctctatgtggctttgaaggatt |
6651218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 6728415 - 6728609
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||| ||||| |||||| | ||||||||| ||| ||||| ||| || ||||||||||||||||| |||||| |||||| ||| || ||||||||| |
|
|
| T |
6728415 |
attgacaaattggaggaggacgtggaacagatggaatcattgacaaccttgattgcggataagactgctataacaaaagtgccattttcaatagtaagat |
6728514 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||| ||||||| |||||| | |||| ||||||||||| ||||| |||| || ||||| || || |||||||||||| ||| ||||| |
|
|
| T |
6728515 |
tgaaaagtattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattcccttctcttgtttggtcttggatgtcgccatcaaat |
6728609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 6532300 - 6532111
Alignment:
| Q |
23 |
acaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagatcaaa |
122 |
Q |
| |
|
|||| ||||| |||||||||||||||||| ||| ||||| ||| || ||||||||||||||||| || || ||| |||||| || |||||||| |||| |
|
|
| T |
6532300 |
acaaattggaggaggacatagaacagatggaatcgttgacaaccttgattgcggataagactgctatagcagaagtccccttttcaatagtaagaccaaa |
6532201 |
T |
|
| Q |
123 |
aagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaa |
212 |
Q |
| |
|
|| ||||| || |||||| | || || ||||||||||| || | |||| |||||||| || |||| |||||||||||| ||| |||| |
|
|
| T |
6532200 |
aaacattgaatatatttctatttgcggctttgaaggattttcaaatgatgtatttccttctatcattcggtcttggatgtcaccatcaaa |
6532111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 6758726 - 6758927
Alignment:
| Q |
12 |
catcaaaattgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagta |
111 |
Q |
| |
|
|||||| |||||||| ||||| |||||| | ||||||||| ||| |||| || || |||||||||||||||| |||| ||| ||| || || || |
|
|
| T |
6758726 |
catcaagattgacaaattggaggaggacttggaacagatggaatcattgattacattgattgcggataagactgcaataacggaagtacccatttcaata |
6758825 |
T |
|
| Q |
112 |
gtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaa |
211 |
Q |
| |
|
|||||| |||||||||| |||||||||| |||||||| ||||||||||| |||||| || | ||||||| | |||| |||| ||||||| ||||||| |
|
|
| T |
6758826 |
ttaagattaaaaagcattagatttatttctctgtgtggctttgaaggatttgcacgtgatatatttccttttgtcattcggtctaggatgtcaccaacaa |
6758925 |
T |
|
| Q |
212 |
at |
213 |
Q |
| |
|
|| |
|
|
| T |
6758926 |
at |
6758927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 6545516 - 6545326
Alignment:
| Q |
23 |
acaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagatcaaa |
122 |
Q |
| |
|
|||| ||||| |||||| | ||||||||| ||| |||| ||| || ||||||||||||||||| |||||| |||||||||| || |||| |||| || |
|
|
| T |
6545516 |
acaaattggaggaggacttggaacagatggaatcgttgaaaaccttgattgcggataagactgctataacaaaagtgcccttttcaatagttagattgaa |
6545417 |
T |
|
| Q |
123 |
aagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||||||||| |||||| | |||| ||||||||||| ||||| |||| || ||||| | |||| ||||||| |||| ||| ||||| |
|
|
| T |
6545416 |
aagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattcccttctctcattcggtcttggctgtcaccatcaaat |
6545326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 6675712 - 6675906
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||| ||||| |||||| | ||||||||| ||| |||| ||| || |||| ||||| || ||| ||| || ||| |||||| || ||||||||| |
|
|
| T |
6675712 |
attgacaaattggaggaggacgtggaacagatggaatcaatgacaaccttgattgcagataaaacagctataataaaagttcccttttcaatagtaagat |
6675811 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
|||| ||||||||||| || || | ||||| ||||||||||| ||| | |||| |||||||| | ||| ||||||||||||| ||| ||||| |
|
|
| T |
6675812 |
caaagagcattggattcatctctttatgtggctttgaaggattttcacttgatgtatttccttctctcattaagtcttggatgtcaccatcaaat |
6675906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 6761316 - 6761420
Alignment:
| Q |
34 |
gaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagatcaaaaagcattggat |
133 |
Q |
| |
|
|||||||||||||||||| ||| || || ||| || ||||||||||||||||| |||||| |||||||||| || | ||||||| ||||| ||||||| |
|
|
| T |
6761316 |
gaggacatagaacagatggaatcgttcacaaccttgattgcggataagactgctataacaaaagtgcccttttcaattgtaagattcaaaagtattggat |
6761415 |
T |
|
| Q |
134 |
ttatt |
138 |
Q |
| |
|
|||| |
|
|
| T |
6761416 |
atatt |
6761420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 6815479 - 6815642
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||| || ||||| |||||| | ||||||||| |||||||| ||| || |||| |||||||||||| ||| || |||||| ||| |||| ||||||| |
|
|
| T |
6815479 |
attgaaaaattggaggaggacttggaacagatggaatctttgattaccttgattgctgataagactgctataaaaaaagtgccattttcagtggtaagat |
6815578 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttc |
182 |
Q |
| |
|
||||||||||||| |||||| | |||| ||||||||||| ||||| |||| ||| |||| |
|
|
| T |
6815579 |
tgaaaagcattggatatatttctttaggtggctttgaaggatttacacgtgatgtattttcttc |
6815642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 6588258 - 6588074
Alignment:
| Q |
29 |
tggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagatcaaaaagcat |
128 |
Q |
| |
|
|||| |||||| | ||||||||| ||| |||| ||| || |||| ||||||||||| | |||| |||||| ||| || ||||||| |||||||| |
|
|
| T |
6588258 |
tggaggaggacttggaacagatggaatcgttgattaccttgattgccgataagactgccatcacaaaagtgccattttcaatagtaaggatgaaaagcat |
6588159 |
T |
|
| Q |
129 |
tggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||| |||||| | ||||| ||||||||||| ||||| |||| || ||||| | |||| |||||||||||| ||| ||||| |
|
|
| T |
6588158 |
tggatatatttctttttgtggctttgaaggattttcacgtgatgtattcccttctctcattcggtcttggatgtcgccatcaaat |
6588074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 4133461 - 4133366
Alignment:
| Q |
55 |
tctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtgga |
150 |
Q |
| |
|
||||| ||||| ||| ||| |||||| ||||| |||||| |||||||||| |||| | ||| ||||||||||||| || |||||| || |||||| |
|
|
| T |
4133461 |
tctttaaccactctgattgtggataacactgcaataacaaaagtgcccttttcagtcgcaaggtcaaaaagcattgaatatatttctctttgtgga |
4133366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 501 - 550
Target Start/End: Original strand, 21228480 - 21228529
Alignment:
| Q |
501 |
ttcaagctcacaaaattccttgacatcacttttggttcaaattggaatga |
550 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||||| ||||||| ||||||| |
|
|
| T |
21228480 |
ttcaagctcaaaaagttccttgacatcccttttgattcaaatgggaatga |
21228529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 8972 - 8778
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||| ||| |||| ||||| ||||| ||||||||||||||||| || ||||||| | |
|
|
| T |
8972 |
attgacaagttggaagaggacatagaacagatggaatctttaaccactctgcttgcagataacactgcattaacaagagtgcccttttcaatagtaaggt |
8873 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||||| |||| || |||||| |||| || ||||||||| ||||| |||||||||| || || ||| ||||||||||||||||||||||| |
|
|
| T |
8872 |
caaaaagtattgtatatatttctttgtgcggccatgaaggattctcacgtgatgtgtttccatctatcattaagtcttggatgtctccaacaaat |
8778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 9e-32; HSPs: 22)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 5073980 - 5073786
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | || |||| || || ||||||||||||||||| |||||||||| | |
|
|
| T |
5073980 |
attgacaagttggaagaggacttagaacagatgacatctttaaccactctgatagcaaataacaccgcaataacaagagtgcccttttcagtagtaaggt |
5073881 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
| ||||||||||||| |||||| |||| || | ||||||||| ||||| ||||||| || || || ||| |||||||||||| || |||||| |
|
|
| T |
5073880 |
cgaaaagcattggatatatttctttgtgcggctatgaaggattctcacgtgatgtgttcccatcgatcatttggtcttggatgtcaccgacaaat |
5073786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 5284461 - 5284342
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | || |||| || || ||||||||||||||||| |||||||||| | |
|
|
| T |
5284461 |
attgacaagttggaagaggacttagaacagatgacatctttaaccactctgatagctaataacaccgcaataacaagagtgcccttttcagtagtaaggt |
5284362 |
T |
|
| Q |
119 |
caaaaagcattggatttatt |
138 |
Q |
| |
|
| ||||||||||||| |||| |
|
|
| T |
5284361 |
cgaaaagcattggatatatt |
5284342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 5344870 - 5345062
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| |||||| |||| ||| | || |||| ||||| |||||| ||| |||||| ||||||||| | |
|
|
| T |
5344870 |
attgacaagttggaagaggacttagaacaaatgaaatctttaaccattctgatcgcaaataacactgcaataacaaaagttccctttttagtagtaaggt |
5344969 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaa |
211 |
Q |
| |
|
||||||||||||||| |||||| |||||||| | ||||||||| |||| |||| ||||| || || || |||||||||||| ||||||| |
|
|
| T |
5344970 |
caaaaagcattggatatatttctctgtgtggctatgaaggattctcacgcgatgtatttccatctatcatctggtcttggatgtcaccaacaa |
5345062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 5066766 - 5066572
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| |||||| ||||| ||| |||| |||| ||||| ||| |||| | |||||| |||||||||| | |
|
|
| T |
5066766 |
attgacaagttagaagaggacatagaacaaatggaatctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggt |
5066667 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||||||||||||| || || |||| || | ||||||||| | ||| |||||||||| || || ||| |||||||||||| ||||||||| |
|
|
| T |
5066666 |
caaaaagcattggatacatctctttgtgcggctatgaaggattctcgcgtgatgtgtttccatctatcattttgtcttggatgtcaccaacaaat |
5066572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 5157700 - 5157506
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||| ||| |||| | | ||||| ||| |||||| |||||| |||||||||| | |
|
|
| T |
5157700 |
attgacaagttggaagaggacatagaacagatggaatctttaaccactctgcttgcacacgacactgcaataaaaagagtacccttttcagtagtaaggt |
5157601 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||||||||||||| || || || | || | ||||||||| | ||| |||||||||| || || ||| |||||||||||| ||||||||| |
|
|
| T |
5157600 |
caaaaagcattggatacatctctttgggcggctatgaaggattttctcgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat |
5157506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 5447596 - 5447796
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| |||||| ||||| ||| |||| |||| ||| | |||||| |||||||||| | ||||| || | |
|
|
| T |
5447596 |
attgacaagctggaagaggacttggaacagatggaatctttaaccactctgcttgcaaataatacttcaataacaacagtgcccttttcggtagttaggt |
5447695 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaatgatat |
218 |
Q |
| |
|
| || |||||||||| |||||| |||| ||||||||||||| | | | |||||||||| || ||||||| |||||||||||| |||| |||| |||| |
|
|
| T |
5447696 |
cgaagagcattggatatatttctttgtgcggatttgaaggatcctcgcatgatgtgtttccatctattattcggtcttggatgtcaccaagaaataatat |
5447795 |
T |
|
| Q |
219 |
c |
219 |
Q |
| |
|
| |
|
|
| T |
5447796 |
c |
5447796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 5350403 - 5350591
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||| ||||| ||| |||| |||| ||||| ||| |||| | |||||| |||||||||| | |
|
|
| T |
5350403 |
attgacaagttggaagaggacatagaacaaatggaatctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggt |
5350502 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||||||||||||| || || |||| || | ||||||||| ||||| |||||||| || ||||| ||||||||||| ||||||||| |
|
|
| T |
5350503 |
caaaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgttt------atcattcattcttggatgtcaccaacaaat |
5350591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 5181999 - 5181805
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||| |||||| ||||| || |||| |||| ||||| ||||||||||||| ||| ||||||||| | |
|
|
| T |
5181999 |
attgacaagttggaagaggatttggaacaaatgaaatctttaaccacattgattgcaaataacactgcaataacaagagtgccgttttcagtagtaaagt |
5181900 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
| |||||||||| || |||||| ||||||||| ||||||||| ||| | |||||||||| | || ||| |||||||||||| || |||||| |
|
|
| T |
5181899 |
ccaaaagcattgcatatatttccttgtgtggatatgaaggattctcacatgatgtgtttccagcgatcatttggtcttggatgtcaccgacaaat |
5181805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 5425919 - 5426113
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||| ||||| ||| |||| |||| ||||| ||| |||||| |||||| |||| |||| | |
|
|
| T |
5425919 |
attgacaagttggaagaggacatagaacaaatggaatctttaaccactctgattgcacataaaactgcaataaaaagagtacccttttcagtggtaatgt |
5426018 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
|| |||||||||||| || || |||| || | ||||||||| ||||| |||||||||| | || ||| |||||||||||| ||||||||| |
|
|
| T |
5426019 |
cacaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgtttccagcgatcatttggtcttggatgtcaccaacaaat |
5426113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 5128489 - 5128292
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||| ||| || || || ||| |||| |||| ||||| ||| |||||| |||||| |||||||||| | |
|
|
| T |
5128489 |
attgacaagttggaagaggacttggaacaaatggaatcattaacaactctgcttgcaaataacactgcaataaaaagagtacccttttcagtagtaaggt |
5128390 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaatgat |
216 |
Q |
| |
|
||||||||||||||| ||| || ||||| || ||||||||| || || |||||||||| || || || |||||||||||| |||||||||||| |
|
|
| T |
5128389 |
caaaaagcattggatatatctctctgtgcggccatgaaggattttcaagtgatgtgtttccatctatcatctggtcttggatgtcaccaacaaatgat |
5128292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 5257406 - 5257297
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||| || |||| |||| ||||| ||||||||||||| || |||| |||||| |
|
|
| T |
5257406 |
attgacaagttggaagaggacttagaacagatgacatctttaaccactctaattgcaaataacactgcaataacaagagtgccattatcagttttaagat |
5257307 |
T |
|
| Q |
119 |
caaaaagcat |
128 |
Q |
| |
|
|||||||||| |
|
|
| T |
5257306 |
caaaaagcat |
5257297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 5176748 - 5176940
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||| |||||| || || ||| |||| |||| ||||| |||||||||||||||| || ||||||| | |
|
|
| T |
5176748 |
attgacaagttggaagaggacttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtcaatagtaaggt |
5176847 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaa |
211 |
Q |
| |
|
||||||||||||||| || || |||| || | ||||||||| ||||| || | ||||| ||||| ||| |||||||||||| ||||||| |
|
|
| T |
5176848 |
caaaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtcaccaacaa |
5176940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 5354683 - 5354492
Alignment:
| Q |
22 |
gacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagatcaa |
121 |
Q |
| |
|
|||||||||||||||||| | ||||| || |||||| ||||||||| |||| || | ||||| |||||||||| ||||| || |||| || || | |
|
|
| T |
5354683 |
gacaagttggaagaggacttggaacaattggaatctttaaccaccctgcttgcaaatgacactgcaataacaagagtacccttctcaatagttagttcca |
5354584 |
T |
|
| Q |
122 |
aaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
|||||||||||| |||||| | ||||| | ||||||||| ||||| |||||||||| || || ||| |||||||||||| ||||||||| |
|
|
| T |
5354583 |
aaagcattggatatatttctttatgtggctatgaaggattctcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat |
5354492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 5096717 - 5096911
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||| || |||| ||| |||| |||| |||| ||| |||||| |||||| |||||||||| | |
|
|
| T |
5096717 |
attgacgagttggaagaggacatagaacaaatggaatcattaaccattctgcttgcaaataacactggaataaaaagagtacccttttcagtagtaaggt |
5096816 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||||||||||||| ||||| || ||||| ||||||||| ||||| |||||||||| || || || ||||||| |||| ||||||||| |
|
|
| T |
5096817 |
caaaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgtctatcatctggtcttggttgtcaccaacaaat |
5096911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 5370580 - 5370774
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| ||| || ||||| ||| |||| |||| ||||| ||| ||| || |||||| |||||||| | | |
|
|
| T |
5370580 |
attgagaagttggaagaggatatagaacagatggaatcattaaccactctgcttgcaaataacactgcaataaaaagggtacccttttcagtagtacggt |
5370679 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||||||||||||| |||||| ||||||| || |||||| ||| | |||| ||||| || || ||| |||||||||||| ||||||||| |
|
|
| T |
5370680 |
caaaaagcattggatacatttcattgtgtggccatgtaggattttcacatgatgtttttccatctatcatttggtcttggatgtcaccaacaaat |
5370774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 5278575 - 5278767
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||| |||||| || || ||| |||| |||| ||||| |||||||||||||||| | ||||||| | |
|
|
| T |
5278575 |
attgacaagttggaagaggacttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtctatagtaaggt |
5278674 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaa |
211 |
Q |
| |
|
||||||||||||||| || || |||| || | ||||||||| ||||| || | ||||| ||||| ||| |||||||||||| ||||||| |
|
|
| T |
5278675 |
caaaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatcatttggtcttggatgtcaccaacaa |
5278767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 211
Target Start/End: Complemental strand, 5243914 - 5243793
Alignment:
| Q |
90 |
aacaagagtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattatt |
189 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||| |||| |||||| ||||||| | ||||||||| |||| |||| ||||| || || || |
|
|
| T |
5243914 |
aacaagagtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacgcgatgtatttccatctatcatc |
5243815 |
T |
|
| Q |
190 |
cagtcttggatgtctccaacaa |
211 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
5243814 |
tggtcttggatgtcaccaacaa |
5243793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 5383340 - 5383529
Alignment:
| Q |
24 |
caagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagatcaaaa |
123 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| || || || |||| ||||| ||||| |||||||||| ||| || || | |||| |||||| |
|
|
| T |
5383340 |
caagttggaagaggacatagaacaaatggaatctttaactactttgcttgcagataacactgcaataacaagagttcccctttcaattttaaggtcaaaa |
5383439 |
T |
|
| Q |
124 |
agcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
|| |||| || |||||| |||| || ||||||||| ||||| |||||||||| || || ||| ||||||||||||| |||||||| |
|
|
| T |
5383440 |
agtattgtatatatttctttgtgcggccatgaaggattctcacgtgatgtgtttccatccatcattaagtcttggatgtcctcaacaaat |
5383529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 89 - 213
Target Start/End: Complemental strand, 5102616 - 5102492
Alignment:
| Q |
89 |
taacaagagtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattat |
188 |
Q |
| |
|
|||||| |||||||||| |||||||||| |||||||||||||||| ||| || || ||||| | ||||||| | ||| | |||||||||| || || || |
|
|
| T |
5102616 |
taacaacagtgcccttttcagtagtaaggtcaaaaagcattggatatatctctctatgtggctatgaaggactttcacatgatgtgtttccatctatcat |
5102517 |
T |
|
| Q |
189 |
tcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
5102516 |
ctggtcttggatgtcaccaacaaat |
5102492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 5690227 - 5690039
Alignment:
| Q |
23 |
acaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagatcaaa |
122 |
Q |
| |
|
||||||||||||||||| | ||||| ||| |||||| ||||| ||| |||| || | |||| ||||||| ||||||||| || | ||||| ||||| |
|
|
| T |
5690227 |
acaagttggaagaggacttggaacaaatggaatctttaaccactctgcttgcaaatgacactggaataacaagtgtgcccttttcaattgtaaggtcaaa |
5690128 |
T |
|
| Q |
123 |
aagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaa |
211 |
Q |
| |
|
||||||||| | |||||| ||||| ||| ||||||||| ||||| || | ||||| || || ||| |||||||||||| ||||||| |
|
|
| T |
5690127 |
aagcattgggtatatttctctgtgcggacatgaaggattctcacgtgatatatttccatctatcatttggtcttggatgtcaccaacaa |
5690039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 5396959 - 5397151
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||| |||||||| || | ||||||||| |||||| |||||| ||||||| |||| ||||| ||| ||||||||| ||| || | |||| | |
|
|
| T |
5396959 |
attgacaaattggaagaagatttggaacagatggaatctttaaccaccttggttgcaaataacactgcaataaaaagagtgccgttttcaattttaaggt |
5397058 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaa |
211 |
Q |
| |
|
|||||||||||||||||| || |||| |||| ||||||||| || || | |||||||| | || ||| |||||||||||| ||||||| |
|
|
| T |
5397059 |
taaaaagcattggatttatctctttgtgcggatatgaaggattttcatgtgaagtgtttccagctatcatttcgtcttggatgtcaccaacaa |
5397151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 5434044 - 5434238
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||| |||||||| ||| | ||||| ||| |||||| ||||| ||| |||| |||| ||||| ||| ||||||||| || ||||| | |||| |
|
|
| T |
5434044 |
attgacaatttggaagatgacttggaacatatggaatctttaaccactctgcttgcaaataacactgcaataaaaagagtgcctctttcagtactgagat |
5434143 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||||||||||||| ||| || |||| || | ||||||||| ||| || | ||||| | || ||||||||||||||||| ||||||||| |
|
|
| T |
5434144 |
caaaaagcattggatatatctctttgtgcggttatgaaggattctcacacgatttatttccatttatcattcagtcttggatgtcaccaacaaat |
5434238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 6668 - 6852
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||| ||||| |||||| | ||||||||| ||| |||| ||| || ||||||||||||||||| |||||| ||| |||||| || ||||| ||| |
|
|
| T |
6668 |
attgacaaattggaggaggacttggaacagatggaatcattgaaaaccttgattgcggataagactgctataacaaaagttcccttttcaatagtacgat |
6767 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtc |
203 |
Q |
| |
|
| |||| |||||||| |||||| | ||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
6768 |
ctaaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgtttccttcacttattcgctcttggatgtc |
6852 |
T |
|
Back To:
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Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 8877618 - 8877812
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| |||||| ||||| ||| |||| |||| ||||| ||| |||||| || ||| || ||||||| | |
|
|
| T |
8877618 |
attgacaagttggaggaggacttagaacagatgaaatctttaaccactctgcttgcaaataacactgcaataaaaagagtaccattttcattagtaaggt |
8877717 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaaat |
213 |
Q |
| |
|
||||||||||||||| |||||| |||| || | ||||||||| | ||| |||||||||| || || ||| |||||||||||| ||||||||| |
|
|
| T |
8877718 |
caaaaagcattggatatatttctttgtgcggctatgaaggattttcgcgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat |
8877812 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 20838718 - 20838831
Alignment:
| Q |
96 |
agtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtct |
195 |
Q |
| |
|
|||||||| | || ||| |||||||||||||||||||| ||| ||||| ||||||| |||||||||| ||| | |||| |||||||| | ||| |||| |
|
|
| T |
20838718 |
agtgccctattcaatagcaagatcaaaaagcattggatatatatcactatgtggatatgaaggattatcacatgatgtttttccttctctcatttggtct |
20838817 |
T |
|
| Q |
196 |
tggatgtctccaac |
209 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
20838818 |
tggatgtcaccaac |
20838831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 20812363 - 20812476
Alignment:
| Q |
96 |
agtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtct |
195 |
Q |
| |
|
|||||||| | || ||| ||||||||||||||||| || ||| ||||| ||||||| ||||||||| ||||| |||| |||||||| | ||| |||| |
|
|
| T |
20812363 |
agtgccctattcaatagcaagatcaaaaagcattgcatatatatcactatgtggatacgaaggattatcacgtgatgtttttccttctctcatttggtct |
20812462 |
T |
|
| Q |
196 |
tggatgtctccaac |
209 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
20812463 |
tggatgtcaccaac |
20812476 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 30417931 - 30418021
Alignment:
| Q |
121 |
aaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaa |
211 |
Q |
| |
|
|||||||||| | ||| || |||||||||||||||||||| |||||| |||| ||||||| | || | |||||||||||| ||||||| |
|
|
| T |
30417931 |
aaaagcattgtttatatatccctgtgtggatttgaaggatttgcacgtgatgtttttccttgtctcatacggtcttggatgtcaccaacaa |
30418021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 12599142 - 12599081
Alignment:
| Q |
121 |
aaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttc |
182 |
Q |
| |
|
||||||||||||| ||| || ||||||||| |||||||||| ||||| |||| |||||||| |
|
|
| T |
12599142 |
aaaagcattggatatatatccttgtgtggatatgaaggattatcacgtgatgtttttccttc |
12599081 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 4898 - 4756
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
|||||||| ||||| |||||| | ||||||||| ||| |||| ||| || ||||||||||||||||| |||||| |||||| ||| || ||||||||| |
|
|
| T |
4898 |
attgacaaattggaggaggacttggaacagatggaatcattgaaaaccttgattgcggataagactgctataacaaaagtgccgttttcaatagtaagat |
4799 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggatt |
161 |
Q |
| |
|
|| || |||||||| |||||| || ||||| ||||||||||| |
|
|
| T |
4798 |
taagaaacattggatatatttctctatgtggctttgaaggatt |
4756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 3391637 - 3391536
Alignment:
| Q |
110 |
tagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaac |
209 |
Q |
| |
|
|||| ||||||||||||||||||| ||| || || ||||||| |||||||||| ||| | |||| |||||||| | ||| |||||||||||| ||||| |
|
|
| T |
3391637 |
tagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatgtcaccaac |
3391538 |
T |
|
| Q |
210 |
aa |
211 |
Q |
| |
|
|| |
|
|
| T |
3391537 |
aa |
3391536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 3286707 - 3286564
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| ||| ||||| || ||| |||| |||| || ||||| | | |||||||||| || | ||||||| |
|
|
| T |
3286707 |
attgacaagttggaagaagacatagtgcagatggaatccttgacaacactgattgcaaataatacagctgttaaagaagtgcccttttcaattgtaagat |
3286608 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggatta |
162 |
Q |
| |
|
|||||||||| ||| ||| || || ||||||| |||||||||| |
|
|
| T |
3286607 |
caaaaagcatcagatatatatccctatgtggatatgaaggatta |
3286564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 3364269 - 3364370
Alignment:
| Q |
110 |
tagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaac |
209 |
Q |
| |
|
|||| ||||||||||||||||||| ||| || || ||||||| |||||||||| ||| | |||| |||||||| | ||| ||||||||| || ||||| |
|
|
| T |
3364269 |
tagtgagatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatatcaccaac |
3364368 |
T |
|
| Q |
210 |
aa |
211 |
Q |
| |
|
|| |
|
|
| T |
3364369 |
aa |
3364370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 3262740 - 3262629
Alignment:
| Q |
97 |
gtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtctt |
196 |
Q |
| |
|
||||||| | || |||||||||||||||||||||||| ||| || || ||||||| || |||||| ||||| |||| ||||| || || ||| ||||| |
|
|
| T |
3262740 |
gtgccctattcaatagtaagatcaaaaagcattggatatatatccctatgtggatatg-aggattttcacgtgatgtttttccctctatcatttggtctt |
3262642 |
T |
|
| Q |
197 |
ggatgtctccaac |
209 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
3262641 |
ggatgtcaccaac |
3262629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 3267302 - 3267198
Alignment:
| Q |
107 |
cagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctcc |
206 |
Q |
| |
|
|||| ||||||| |||||||| |||| ||| || || ||||||| |||||||||| || |||| |||| ||| |||||||||||||||||||| || |
|
|
| T |
3267302 |
cagtggtaagattgaaaagcatcggatatatatctctatgtggatatgaaggattatcagaagatgtttttcattctattattcagtcttggatgtcacc |
3267203 |
T |
|
| Q |
207 |
aacaa |
211 |
Q |
| |
|
||||| |
|
|
| T |
3267202 |
aacaa |
3267198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 31175933 - 31176046
Alignment:
| Q |
96 |
agtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtct |
195 |
Q |
| |
|
|||||||| | || ||| ||||||||||||||||| || ||| || || ||||||| |||||||||| || || | || |||||||| | ||| |||| |
|
|
| T |
31175933 |
agtgccctattcaatagcaagatcaaaaagcattgcatatatatctctatgtggatatgaaggattatcatgtgacgtttttccttctctcatttggtct |
31176032 |
T |
|
| Q |
196 |
tggatgtctccaac |
209 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
31176033 |
tggatgtcaccaac |
31176046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 8357 - 8215
Alignment:
| Q |
19 |
attgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagat |
118 |
Q |
| |
|
||||| || ||||| |||||| | ||||||||| |||||||| ||| || |||| |||||||||||| ||| || |||||| ||| |||| ||||||| |
|
|
| T |
8357 |
attgaaaaattggaggaggacttggaacagatggaatctttgattaccttgattgctgataagactgctataaaaaaagtgccattttcagtggtaagat |
8258 |
T |
|
| Q |
119 |
caaaaagcattggatttatttcactgtgtggatttgaaggatt |
161 |
Q |
| |
|
|||| |||||||| |||||| | |||| ||||||||||| |
|
|
| T |
8257 |
tgaaaaccattggatatatttctttaggtggctttgaaggatt |
8215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 6242 - 6146
Alignment:
| Q |
115 |
agatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctccaacaa |
211 |
Q |
| |
|
|||||||||||||||| | ||| || || || |||| |||||||||| ||||| |||| |||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
6242 |
agatcaaaaagcattgtgtatatatccctatgcggatatgaaggattatcacgtgatgtttttccttcccttatttggtcttggatgtcaccaacaa |
6146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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