View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2155_low_2 (Length: 528)

Name: NF2155_low_2
Description: NF2155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2155_low_2
NF2155_low_2
[»] chr7 (2 HSPs)
chr7 (11-321)||(6984949-6985259)
chr7 (352-514)||(6984540-6984702)
[»] chr4 (4 HSPs)
chr4 (356-514)||(31900745-31900897)
chr4 (356-514)||(31964541-31964693)
chr4 (11-131)||(31964142-31964262)
chr4 (11-113)||(31900347-31900449)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 6985259 - 6984949
Alignment:
Q  11 acatcatcagcgaactcaccatccatggctgtatgtaactcctccaaccttcttttaaaataccaatgcaatataactgatggtagaaaatgcaaaagaa 110  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6985259 acatcatcagcgaactcaccatccatgggtgtatgtaactcctccaaccttcttttaaaataccaatgcaatataactgatggtagaaaatgcaaaagaa 6985160  T
Q  111 atataaggccaaatagaaaaaatgaagtgttaagcatgtaaaaatatcaaagaagtggattagtattgacagtgttgaaaatatagttagttagagttac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6985159 atataaggccaaatagaaaaaatgaagtgttaagcatgtaaaaatatcaaagaagtggattagtattgacagtgttgaaaatatagttagttagagttac 6985060  T
Q  211 tggttggttagtatataagctaagttaagcatataagtcacagcgttacctcattggtgccatcttttcattttgtatctcatttctactactatcaata 310  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6985059 tggttggttagtatataagctaacttaagtatataagtcacagcgttacctcattggtgccatcttttcattttgtatctcatttctactactatcaata 6984960  T
Q  311 caacaagcttt 321  Q
    |||||||||||    
T  6984959 caacaagcttt 6984949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 352 - 514
Target Start/End: Complemental strand, 6984702 - 6984540
Alignment:
Q  352 cttgttacaaaccagggaaaacccgaggaagtgtattcataagcacggaagagacaatccattgatacttggaggtgaggtaatttgtttctgcctcaaa 451  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6984702 cttgttacaaaccagggaaaacccgaggaagtgtagtcataagcacggaagagacaatccattgatacttggaggtgagataatttgtttctgcctcaaa 6984603  T
Q  452 attactatgccgtccctcttctgacatttgatcattgaacgattgtaaagcatggaccaaaat 514  Q
    |||| |||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6984602 attattatgcattccctcttctgacatttgatcattgaaagattgtaaagcatggaccaaaat 6984540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 356 - 514
Target Start/End: Original strand, 31900745 - 31900897
Alignment:
Q  356 ttacaaaccagggaaaacccgaggaagtgtattcataagcacggaagagacaatccattgatacttggaggtgaggtaatttgtttctgcctcaaaatta 455  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||||||| ||||||| ||||| ||||| ||||||||  ||||||| |||||||      
T  31900745 ttacaaaccagggaaaacgcgaggaagtgtagccataagcacggaagagacagtccattggtacttagaggtaaggtaattcctttctgcttcaaaat-- 31900842  T
Q  456 ctatgccgtccctcttctgacatttgatcattgaacgattgtaaagcatggaccaaaat 514  Q
     |||||| |   || |||||| ||||||| ||||| |||||||||||||||||||||||    
T  31900843 -tatgcctt---tcctctgacgtttgatccttgaaagattgtaaagcatggaccaaaat 31900897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 356 - 514
Target Start/End: Original strand, 31964541 - 31964693
Alignment:
Q  356 ttacaaaccagggaaaacccgaggaagtgtattcataagcacggaagagacaatccattgatacttggaggtgaggtaatttgtttctgcctcaaaatta 455  Q
    |||||||||||||||||| |||||||||||   ||||||||| ||||||||| ||||||||||||| ||||| ||||||||  ||||||| |||||||      
T  31964541 ttacaaaccagggaaaacgcgaggaagtgtggccataagcacagaagagacagtccattgatacttagaggtaaggtaattcctttctgcttcaaaat-- 31964638  T
Q  456 ctatgccgtccctcttctgacatttgatcattgaacgattgtaaagcatggaccaaaat 514  Q
     |||||| |   || |||||| ||||||| ||||| |||||||||||||||||||||||    
T  31964639 -tatgcctt---tcctctgacgtttgatccttgaaagattgtaaagcatggaccaaaat 31964693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 31964142 - 31964262
Alignment:
Q  11 acatcatcagcgaactcaccatccatggctgtatgtaactcctccaaccttcttttaaaataccaatgcaatataactgatggtagaaaatgcaaaagaa 110  Q
    |||||||||| |||||| ||||||||| |||||  ||||||||||| |||||||||||||||||||||||||||| || ||||||| ||||| |||||||    
T  31964142 acatcatcagtgaactccccatccatgactgtacttaactcctccagccttcttttaaaataccaatgcaatatagctaatggtagcaaatgaaaaagaa 31964241  T
Q  111 atataaggccaaatagaaaaa 131  Q
    ||| || ||| | ||||||||    
T  31964242 atacaaagccgattagaaaaa 31964262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 31900347 - 31900449
Alignment:
Q  11 acatcatcagcgaactcaccatccatggctgtatgtaactcctccaaccttcttttaaaataccaatgcaatataactgatggtagaaaatgcaaaagaa 110  Q
    |||||||||| |||||| ||||||||| |||||  ||||||||||| |||||||||||||||||| ||||||||| || ||||||| ||||| ||| |||    
T  31900347 acatcatcagtgaactccccatccatgactgtacttaactcctccagccttcttttaaaataccagtgcaatatagctaatggtagcaaatgaaaaggaa 31900446  T
Q  111 ata 113  Q
    |||    
T  31900447 ata 31900449  T

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