View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2155_low_5 (Length: 276)
Name: NF2155_low_5
Description: NF2155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2155_low_5 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 93 - 263
Target Start/End: Complemental strand, 53147429 - 53147259
Alignment:
| Q |
93 |
gatggtcaaataaatactattagagcttctgaattttgtttgaaatgaattaggttggatgcacaaagtttgtttcaaattaaaaatttatatctaaacg |
192 |
Q |
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| T |
53147429 |
gatggtcaaataaatactattagagcttctgaattttgtttgaaatgaattaggttggatgcacaaagtttgtttgaaattacaaatttatatctaaacg |
53147330 |
T |
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| Q |
193 |
tgattttctgcatgaaaaaacttatatagcaaaggtattaaaacaatttgatatgaacaaatttaatttgt |
263 |
Q |
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| T |
53147329 |
tgattttctgcatggaaaaacttatataacaaaggtattaaaacagtttgatatgaacaaatttaatttgt |
53147259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 53147521 - 53147487
Alignment:
| Q |
1 |
tgagtatatttttaaatgaggaatatcatagtgac |
35 |
Q |
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| T |
53147521 |
tgagtatatttttaaatgaggaatatcatagtgac |
53147487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 26830153 - 26830276
Alignment:
| Q |
130 |
gtttgaaatgaattaggttggatgcacaaagtttgtttcaaattaaaaattta-tatctaaacgtgattttctgcatgaaaaaacttatatagcaaaggt |
228 |
Q |
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| T |
26830153 |
gtttgaaatgaaatatgttggatgcgcaaagtttgtttggatttgtaaatttattatttaaatgagattttgtgcatcactaaacttatatagaaaatgt |
26830252 |
T |
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| Q |
229 |
attaaaacaatttgatatgaacaa |
252 |
Q |
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| T |
26830253 |
gttaaaataatttgatatggacaa |
26830276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 6411880 - 6411781
Alignment:
| Q |
156 |
caaagtttgtttcaaattaaaaatttat-atctaaacgtgattttctgcatgaaaaaacttatatagcaaaggtattaaaacaatttgatatgaacaaat |
254 |
Q |
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| T |
6411880 |
caaagtttgtttggacttgaaaatttattatttaaatgagattttatgcatcaagaaacttatatagaaaataaattaaaataatttgatatgaacaaat |
6411781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 27164178 - 27164056
Alignment:
| Q |
130 |
gtttgaaatgaattaggttggatgcacaaagtttgtttcaaattaaaaattta-tatctaaacgtgattttctgcatgaaaaaacttatatagcaaaggt |
228 |
Q |
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|||||||||||| || ||||||||| ||||||||||| || || ||||||| ||| |||| | |||||| ||||| ||||| |||||||| ||| || |
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| T |
27164178 |
gtttgaaatgaaatatgttggatgcgcaaagtttgttcgaatttgtaaatttattatttaaatgagattttgtgcat-caaaaatttatataggaaatgt |
27164080 |
T |
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| Q |
229 |
attaaaacaatttgatatgaacaa |
252 |
Q |
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| T |
27164079 |
gttaaaataatttgatatggacaa |
27164056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 13220 - 13321
Alignment:
| Q |
131 |
tttgaaatgaattaggttggatgcacaaagtttgtttcaaattaaaaattta-tatctaaacgtgattttctgcatgaaaaaacttatatagcaaaggta |
229 |
Q |
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|||||||| || || |||| ||||||||||||||||| | ||| ||||||| ||| |||| | |||||| ||||| || ||||||||||| |||| ||| |
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| T |
13220 |
tttgaaattaaatatgttgcatgcacaaagtttgtttgtatttacaaatttactatttaaatgagattttgtgcatcaagaaacttatataacaaatgta |
13319 |
T |
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| Q |
230 |
tt |
231 |
Q |
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|| |
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| T |
13320 |
tt |
13321 |
T |
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