View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2155_low_8 (Length: 237)
Name: NF2155_low_8
Description: NF2155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2155_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 21548023 - 21547833
Alignment:
| Q |
15 |
actcttgacagcaaggtatatcaggcagtatgttcttctcaatgcatgttattcttctaaggtaatagtgaagcattactttcttatcattgccttactg |
114 |
Q |
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| T |
21548023 |
actcttgacagcaaggtatatcaggcagtatgttcttctcaatgcatgttattcttctaaggtaatagtgaagcattactttcttatcattgccttactg |
21547924 |
T |
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| Q |
115 |
gtatctatttcttcttttaccgtaatttttcttccgttgcca-----tgccttttccacatagctatataaattgttctgtcggaagagat |
200 |
Q |
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| T |
21547923 |
gtatctatttcttcttttaccgtaatttttcttccgttgccatgccatgccttttccacatagctatataaattgttctgtcggaagagat |
21547833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 21547481 - 21547439
Alignment:
| Q |
195 |
agagatgttttgccgttaccatgccttttaccgtaatttttct |
237 |
Q |
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| T |
21547481 |
agagatgttttgccgttaccatgccttttaccgtaatttttct |
21547439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 167
Target Start/End: Complemental strand, 21547425 - 21547386
Alignment:
| Q |
128 |
cttttaccgtaatttttcttccgttgccatgccttttcca |
167 |
Q |
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| T |
21547425 |
cttttaccgtaatttttctgtcgttgccatgccttttcca |
21547386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 21547457 - 21547421
Alignment:
| Q |
128 |
cttttaccgtaatttttcttccgttgccatgcctttt |
164 |
Q |
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| T |
21547457 |
cttttaccgtaatttttctgtcgttgccatgcctttt |
21547421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 45 - 237
Target Start/End: Original strand, 9451879 - 9452072
Alignment:
| Q |
45 |
tgttcttctcaatgcatgttattcttctaaggtaatagtgaagcattactttcttatcattgccttactggtatctatttcttcttttaccgtaa-tttt |
143 |
Q |
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| T |
9451879 |
tgttcttctcaattcatgttattctcctaaggtaatagtgaagcattactttcttatcattgccttactggtatctatttcttcttttaccgtaattttt |
9451978 |
T |
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| Q |
144 |
tcttccgttgccatgccttttccacatagctatataaattgttctgtcggaagagatgttttgccgttaccatgccttttaccgtaatttttct |
237 |
Q |
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| T |
9451979 |
tctgatgttgccatgccttttccagatagctatataaattgttctgtcataagagatgttttgccattgccatgccttttaccgtaatttttct |
9452072 |
T |
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