View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21560_high_13 (Length: 373)
Name: NF21560_high_13
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Complemental strand, 15153094 - 15152745
Alignment:
| Q |
8 |
cagagagcagctttgcactagggtgtgggggtatttaattattctttttcctgtttacatgtcatgatttgcactatgttttgtaacatttatcgtcacc |
107 |
Q |
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| T |
15153094 |
cagagagcagctttgcactagggtgtgggggtatttaattattctttttcctgtttacatgtcatgatttgcactatgttttgtaacatttatcgtcacc |
15152995 |
T |
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| Q |
108 |
aaccactgcattatagttcaatgggggtccattttttgggagacatgcaagatggtcagggatcaataaagtggggtcccttctgtatttttgggccatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15152994 |
aaccactgcattatagttcaatgggggtccattttttgggagacatgcaagatggtcagggatcaataaagtggggtcccttctgtatttttgggccatg |
15152895 |
T |
|
| Q |
208 |
gcccactaactttacagcctaattggatatatgaatctaaataaattctaaaggtacgtatcccaaatctcatataagcatagcatgtaccatgttttat |
307 |
Q |
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| T |
15152894 |
gcccactaactttacagcctaattggatatatgaatctaaataaattctaaaggtacgtatcccaaatctcatataagcatagcatgtaccatgttttat |
15152795 |
T |
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| Q |
308 |
cacgaaaaacttcaatatacgtacgttggaattattcatcatgaattatt |
357 |
Q |
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| T |
15152794 |
cacgaaaaacttcaacatacgtacgttggaattattcatcatgaattatt |
15152745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 30658985 - 30659088
Alignment:
| Q |
8 |
cagagagcagctttgcactagggtgtgggggtatttaattattctttttcctgtttacatgtcatgatttgcactatgttttgtaacatttatcgtcacc |
107 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| | |||| |||||||||||||||| |
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| T |
30658985 |
cagagagcagctttgcacttgggtgtgggggtatttaattattctttttactgtttacatgtcatggtttgcactgt-tttttaaacatttatcgtcacc |
30659083 |
T |
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| Q |
108 |
aacca |
112 |
Q |
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||||| |
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| T |
30659084 |
aacca |
30659088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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