View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21560_high_14 (Length: 329)
Name: NF21560_high_14
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 34593531 - 34593238
Alignment:
| Q |
18 |
agataaaacagaattcatgaattactagaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatctaattttccttctgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34593531 |
agataaaacagaattcatgaattactagaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatcaaattttccttctgt |
34593432 |
T |
|
| Q |
118 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattttcttgttttttgatcccatgatttcatacactatc |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
34593431 |
tattgcagacaaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaactttcttgt-ttttgatcccttgatttcatacactatc |
34593333 |
T |
|
| Q |
218 |
cnnnnnnnnnaataaaatttttgaggtaggcgttagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgat |
312 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34593332 |
ctttttttttaataaaatttttgaggtaggcggtagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgtttcctcttgat |
34593238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 34577665 - 34577609
Alignment:
| Q |
121 |
tgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
177 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| ||||| | |||||||| ||||| |
|
|
| T |
34577665 |
tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
34577609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 32589905 - 32589846
Alignment:
| Q |
118 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
177 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||| | |||||||| ||||| |
|
|
| T |
32589905 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32589846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 32600353 - 32600294
Alignment:
| Q |
118 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
177 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||| | |||||||| ||||| |
|
|
| T |
32600353 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32600294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 24884037 - 24884099
Alignment:
| Q |
120 |
ttgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattt |
182 |
Q |
| |
|
||||||| ||| ||||| ||||||| ||||| |||||||||| | ||||||||||||| |||| |
|
|
| T |
24884037 |
ttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt |
24884099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University