View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21560_high_16 (Length: 318)
Name: NF21560_high_16
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_high_16 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 11074678 - 11074960
Alignment:
| Q |
19 |
cattagacaacaccggctacactaccnnnnnnnnngttaaaatgttgcaatatcgatattaaggtttccaataacatgggacttaagtttacaaggctac |
118 |
Q |
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| T |
11074678 |
cattagacaacaccggctacactaccaaaaaaaa-gttaaaatgttgcaatatcgatattaaggtttccaataacatgggacttaagtttacaaggctac |
11074776 |
T |
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| Q |
119 |
atatcaactaggaaaattaaggtaacctcatttttaaacatggacaataattatgactgcggtttatgtccgataagtaatttaaacatgattatatgat |
218 |
Q |
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| T |
11074777 |
atatcaactaggaaaattaaggcaacctcatttttaaacatggacaataattatgactgcggtttatgtccgataagtaatttaaacatgattatatgat |
11074876 |
T |
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| Q |
219 |
attgcacaaacatgattattagtgaagtattttatgttgtgttttatgatttgtgtgattgatgtacattgagacaaataatct |
302 |
Q |
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| T |
11074877 |
attgcacaaacatgattattagtgaagtattttatgttgtgttttatgatttgtgtgattgatgtacattgagaccaataatct |
11074960 |
T |
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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 80433 - 80347
Alignment:
| Q |
67 |
aatatcgatattaaggtttccaataacatgggacttaagtttacaaggctacatatcaactaggaaaattaaggtaacctcattttt |
153 |
Q |
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| T |
80433 |
aatattgatattaaggtttacaaaaacatggtactgaattttagaaagctacatagaaattaggaaaattaaggtaatctcattttt |
80347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 16397417 - 16397503
Alignment:
| Q |
67 |
aatatcgatattaaggtttccaataacatgggacttaagtttacaaggctacatatcaactaggaaaattaaggtaacctcattttt |
153 |
Q |
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| T |
16397417 |
aatattgatattaaggtttccaataacatggtacttaattttaaaaagctacatagaaattatgaaaattaagatagtctcattttt |
16397503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 12112195 - 12112123
Alignment:
| Q |
206 |
atgattatatgatattgcacaaacatgattattagtgaagtattttatgttgtgttttatgatttgtgtgatt |
278 |
Q |
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| T |
12112195 |
atgattctatgatgttgtgcaaacatgattaatcgtgaagtattgtatgttgtgttttgtgatctgtctgatt |
12112123 |
T |
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