View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21560_high_9 (Length: 442)
Name: NF21560_high_9
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_high_9 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 428
Target Start/End: Original strand, 31322403 - 31322817
Alignment:
| Q |
14 |
atattatgtaagatttagtcatcttagtcgtatgcacccctagccccatgatccattaaacactaattgattatgattttttataggcaaatgttagtgg |
113 |
Q |
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| T |
31322403 |
atattatgtaagatttagtcatcttagtcgtatgcacccctagccccatgatccattaaacactaattgattatgattttttataggcaaatgttagtgg |
31322502 |
T |
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| Q |
114 |
taaattagtcaagggatggggaaactaatatcaacatgcatcaaactctaaattaaatattcttcttgatacttttttagcgttataacttataccaccg |
213 |
Q |
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| T |
31322503 |
taaattagtcaagggatggggaaactaatatcaacatgcatcaaactctaaattaaatattcttcttgatacttttttagcgttataacttataccaccg |
31322602 |
T |
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| Q |
214 |
acctaccaataatggattgatccaagtgataagggatttggacaccttcagcaactggttaagggttcaatcatcatctcttgcgtatggagaaaactcg |
313 |
Q |
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| T |
31322603 |
acctatcaataatgaattgatccaagtgataagggatttgaacaccttcagcaagtggttaagggttcaatcatcatctcctgtgtaaggagaaaactcg |
31322702 |
T |
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| Q |
314 |
attgaaaggagaaaatccaccttatgtacctcaccgattttccaatgaagattaatcactggtaaacgacggtgaaaactttgtatcagtaacataataa |
413 |
Q |
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| T |
31322703 |
attgaaaggggagaacccaccttatatacctcaccgattttccaatgaagattagttactggtaaacgacagtgaaaactttgtaccaataacatagtaa |
31322802 |
T |
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| Q |
414 |
caaaatgaaaaaact |
428 |
Q |
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| T |
31322803 |
caaaatgaaacaact |
31322817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 418
Target Start/End: Complemental strand, 42563765 - 42563705
Alignment:
| Q |
358 |
atgaagattaatcactggtaaacgacggtgaaaactttgtatcagtaacataataacaaaa |
418 |
Q |
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| T |
42563765 |
atgaagattaatcactgttaaacgagggtaaaaactttgtatcaatatcatagtaaaaaaa |
42563705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 17833437 - 17833486
Alignment:
| Q |
218 |
accaataatggattgatccaagtgataagggatttggacaccttcagcaa |
267 |
Q |
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| T |
17833437 |
accaacaatggatttatccaagtggtaagggatttggaccccttaagcaa |
17833486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 21612278 - 21612240
Alignment:
| Q |
217 |
taccaataatggattgatccaagtgataagggatttgga |
255 |
Q |
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| T |
21612278 |
taccaacaatggattgatccaagtgataagagatttgga |
21612240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 47845 - 47894
Alignment:
| Q |
218 |
accaataatggattgatccaagtgataagggatttggacaccttcagcaa |
267 |
Q |
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| T |
47845 |
accaacaatggattggtccaagtgataaggtatttgggcaccttaagcaa |
47894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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