View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21560_low_10 (Length: 453)
Name: NF21560_low_10
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Complemental strand, 41592430 - 41592007
Alignment:
| Q |
17 |
atgaagatgatacaagttcaggataataaaaatcatattacggaagtgcttgcagccaatgatcttgattgcgatgacttggattccatctgtgtggaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41592430 |
atgaagatgatacaagttcaggataataaaaatcatattacggaagtgcttgcagccaatgatcttgattgcgatgacttggattccatctgtgtggaag |
41592331 |
T |
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| Q |
117 |
acacaatggttctcagtaactatatagaagagattattgtgtcagcaatctctcatcatttgatgaaaaacaaagacctcgaatacagaaatgggaagct |
216 |
Q |
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| T |
41592330 |
acacaatggttctcagtaactatatagaagagattattgtgtcagcaatctctcatcatttgatgaaaaacaaagacctcgaatacagaaatgggaagct |
41592231 |
T |
|
| Q |
217 |
gattatttcttgcaataggtgagacttgcaagttgcaacattaattgcatga-----aaatgaacatgaaccatgtatatttgatgtacttactaatgct |
311 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41592230 |
gattatttcttgtaataggtgagacttgaaagttgcaacattaattgcatgaaaattaaatgaacatgaaccatgtatatttgatgtacttactaatgct |
41592131 |
T |
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| Q |
312 |
tgtggaacagtttgtcgcatgcattgggtatattccgaaaagggaaattcagtggaagagatacatcaaagttggaggatcaagctctaaaatctgaggt |
411 |
Q |
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| T |
41592130 |
tgtggaacagtttgtcgcatgcattgggtatattccgaaaagggaaattcagtggaagagatacatcaaagttggaggatcaagctctaaaatctgaggt |
41592031 |
T |
|
| Q |
412 |
ttgcactattagttatgtttgttc |
435 |
Q |
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| T |
41592030 |
ttgcactattagttatgtttgttc |
41592007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 2488743 - 2488967
Alignment:
| Q |
17 |
atgaagatgatacaagttcaggataataaaaatcatattacggaagtgcttgcagccaatgatcttgattgcgatgacttggattccatctgtgtggaag |
116 |
Q |
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||||||| |||||| |||| ||||| || || ||||| | ||||||| | |||||||||||||||||||| ||||| |||||||||||||||| | || |
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| T |
2488743 |
atgaagaagatacagattcaagataacaagaaccatatcatggaagtgttagcagccaatgatcttgattgtcatgacctggattccatctgtgtagcag |
2488842 |
T |
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| Q |
117 |
acacaatggttctcagtaactatatagaagagattattgtgtcagcaatctctcatcatttgatgaaaaacaaagacctcgaatacagaaatgggaagct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| | ||||| |||||||| | |||||||||||||| || || |
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| T |
2488843 |
acacaatggttctcagtaactatatagaagagattatcgtgtcagcaatttcgtatcatataatgaagaacaaagagcctgaatacagaaatggaaaact |
2488942 |
T |
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| Q |
217 |
gattatttcttgcaataggtgagac |
241 |
Q |
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||| ||| | ||||| |||| |||| |
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| T |
2488943 |
gatcattccatgcaacaggttagac |
2488967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 8842953 - 8842865
Alignment:
| Q |
58 |
ggaagtgcttgcagccaatgatcttgattgcgatgacttggattccatctgtgtggaagacacaatggttctcagtaactatatagaag |
146 |
Q |
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|||||| |||||||||||| |||||||| ||||| | |||||||||||||| | |||||||||||||| ||||||| ||||||| |
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| T |
8842953 |
ggaagtccttgcagccaattatcttgatattcatgacattgattccatctgtgtagcggacacaatggttctttgtaactacatagaag |
8842865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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