View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21560_low_12 (Length: 432)
Name: NF21560_low_12
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_low_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 432
Target Start/End: Original strand, 32144440 - 32144864
Alignment:
| Q |
8 |
agattattcttagacttgattcttaagtaatgtgagacttttttatgtatcgaaacaaaatcttattattcagccattaccattaatagtggtattaaaa |
107 |
Q |
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| T |
32144440 |
agattattcttagatttgattcttatgtaatgtgagacttttttatgtaccgaaacaaaatcttattattcagccattaccattaccagtggtactaaaa |
32144539 |
T |
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| Q |
108 |
taccgctggtctaaaataaattatcttgtgaacccactatctcggtacatattacggtcacacttttagaccatttggatcgcgtagagaattattttaa |
207 |
Q |
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| T |
32144540 |
taccgctagtctaaaataaattatcttgtggacccattatctcggtacacattacggtcacactttcagatcatttggatcgcgtagagaattattttaa |
32144639 |
T |
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| Q |
208 |
atttttgaagtatatagtgtaatattttgatgatcaactttatttttaatgccttt-nnnnnnnctttatgtttaatgcttattacaacataaattttgn |
306 |
Q |
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| T |
32144640 |
atttttaaagtatatagtgtaatattttgatgatcaactttattcttaatgcctttaaaaaaaactttatgtttaatgcttattacaacat-aattttat |
32144738 |
T |
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| Q |
307 |
nnnnnnnnatcctcctccctnnnnnnnnttgtatttatatattatagattatttggtacacccgaacnnnnnnnnnctatctaactctcccactaaccat |
406 |
Q |
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| T |
32144739 |
ttttttttatcctccaccctaaaaaaaattgtatttatatattatagattatttagtccacccgaactttttttttctatctaactctcccactaaccat |
32144838 |
T |
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| Q |
407 |
tacattgctaactatgtaaagacaaa |
432 |
Q |
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| T |
32144839 |
tacagtgctaactatgtaaagacaaa |
32144864 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 51810290 - 51810257
Alignment:
| Q |
271 |
ctttatgtttaatgcttattacaacataaatttt |
304 |
Q |
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| T |
51810290 |
ctttatgtttaatgcttattataacataaatttt |
51810257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 4672308 - 4672271
Alignment:
| Q |
27 |
ttcttaagtaatgtgagacttttttatgtatcgaaaca |
64 |
Q |
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| T |
4672308 |
ttctttagcaatgtgagacttttttatgtatcgaaaca |
4672271 |
T |
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