View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21560_low_14 (Length: 427)
Name: NF21560_low_14
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 871989 - 872399
Alignment:
| Q |
17 |
catatcatttagcaaagacactactttgatgtcgatatcttcctgactctattcagatgaacctgctctaatgttctacaaaggcatggcaaaggtatca |
116 |
Q |
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| T |
871989 |
catatcatttagcaaagacactactttgatgtcgatatcttcctgactctattcagatgaacctgctctaatgttctacaaaggcatggcaaaggtatca |
872088 |
T |
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| Q |
117 |
tcatcatgtagcaaatatgctgctcccaaatcattagttgatagcaaagtattgctaatttcatatactctcttgcaaattatatgagaaagtggatgag |
216 |
Q |
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| T |
872089 |
tcatcatgtagcaaatatgctgctcccaaatcattagttgatagcaaagtattgctaatttcatatactctcttgcaaattatatgagaaagtggatgag |
872188 |
T |
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| Q |
217 |
aaaggtccccttggtagaatttatgagcccttcctgcaatatttatccagctacagccaggagttttaaccaaacctaaatccctcatctttcctctaat |
316 |
Q |
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| T |
872189 |
aaaggtccccttggtagaatttatgagcccttcctgcaatatttatccagctacagccaggagttttaaccaaacctaaatccctcatctttcctctaat |
872288 |
T |
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| Q |
317 |
agttgaaaccccaagagccataccacgggactgatagattccccacaaagctacatagttgctagtattatttggctctaattgaaataaatgatgtgct |
416 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
872289 |
agttgaaaccccaagaaccataccacgggactgatagattccccacaaagctacatagttgctagtattatttggctctaattgaaataaatgatgtgct |
872388 |
T |
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| Q |
417 |
gcaacttctcc |
427 |
Q |
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| T |
872389 |
gcaacttctcc |
872399 |
T |
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