View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21560_low_2 (Length: 783)
Name: NF21560_low_2
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 97 - 312
Target Start/End: Original strand, 24962009 - 24962224
Alignment:
| Q |
97 |
cagttgggagcgttttagacttttcaatcaaatatgtttgttttccaaactttccgtccacattagtgaggaaagatttttaggcgtggttcgcacattt |
196 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
24962009 |
cagttgggggcgttttagacttttcaatcaaatatgtttgttttccaaactttccgtccacattagtgaggaaagatttttaggcgtgggtcccacattt |
24962108 |
T |
|
| Q |
197 |
ctttctttcctctttaattgttcccttgaaccaaactgtggaacaattcttgttttccgtactttccatccattcccaatctttccttcctcaattttga |
296 |
Q |
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||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |
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| T |
24962109 |
ctttctttcctctctaattgttcccttgaaccacaatgtggaacaattcttgttttccatgctttccatccattcccaatctttccttcctcaatcttga |
24962208 |
T |
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| Q |
297 |
gaaccaaacataacct |
312 |
Q |
| |
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|||||||||||||||| |
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| T |
24962209 |
gaaccaaacataacct |
24962224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 190 - 308
Target Start/End: Original strand, 29078770 - 29078888
Alignment:
| Q |
190 |
cacatttctttctttcctctttaattgttcccttgaaccaaactgtggaacaattcttgttttccgtactttccatccattcccaatctttccttcctca |
289 |
Q |
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| T |
29078770 |
cacattactttctttccttttcagttgttcccttgaaccaaactgtggaacaatttttggtttccgtactttccatccacaaccaatctttccttcctca |
29078869 |
T |
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| Q |
290 |
attttgagaaccaaacata |
308 |
Q |
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|| ||| ||||||||||| |
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| T |
29078870 |
atcttggaaaccaaacata |
29078888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 190 - 308
Target Start/End: Complemental strand, 10310106 - 10309988
Alignment:
| Q |
190 |
cacatttctttctttcctctttaattgttcccttgaaccaaactgtggaacaattcttgttttccgtactttccatccattcccaatctttccttcctca |
289 |
Q |
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| T |
10310106 |
cacattactttctttccttttcagttgttcccttgaaccaaactgtggaacaatttttggtttccatactttccatccacaatcaatctttccttcctca |
10310007 |
T |
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| Q |
290 |
attttgagaaccaaacata |
308 |
Q |
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|| ||| ||||||||||| |
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| T |
10310006 |
atcttgcaaaccaaacata |
10309988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 98 - 307
Target Start/End: Complemental strand, 34515879 - 34515670
Alignment:
| Q |
98 |
agttgggagcgttttagacttttcaatcaaatatgtttgttttccaaactttccgtccacattagtgaggaaagatttttaggcgtggttcgcacatttc |
197 |
Q |
| |
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||||||| || ||||||| || | || ||||||| |||||| ||| |||||| |||||| ||| |||| | ||||||||| ||| || ||| || | |
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| T |
34515879 |
agttgggggcattttagatttcttaaacaaatatagttgtttctcaatctttccatccacactagcacggaatgttttttaggcatgggtcccacgttac |
34515780 |
T |
|
| Q |
198 |
tttctttcctctttaattgttcccttgaaccaaactgtggaacaattcttgttttccgtactttccatccattcccaatctttccttcctcaattttgag |
297 |
Q |
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||||||||| | | |||||||||||||||||||||||||||||||| || |||| || ||||||||||| |||||||||||||||||||| ||| |
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| T |
34515779 |
tttctttccattctcattgttcccttgaaccaaactgtggaacaattttttgtttctgtgctttccatccacaaccaatctttccttcctcaatcttgca |
34515680 |
T |
|
| Q |
298 |
aaccaaacat |
307 |
Q |
| |
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|||||||||| |
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| T |
34515679 |
aaccaaacat |
34515670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 13196547 - 13196414
Alignment:
| Q |
174 |
ttttaggcgtggttcgcacatttctttctttcctctttaattgttcccttgaaccaaactgtggaacaattcttgttttccgtactttccatccattccc |
273 |
Q |
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|||||||||||| || ||| || ||||||||||| | ||||||||||| ||| ||||| ||||| ||| ||| ||| ||| ||||||||||| || |
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| T |
13196547 |
ttttaggcgtgggtcccaccttactttctttccttgcttattgttcccttaaactaaactctggaaagattgttggttttcgtgctttccatccacaacc |
13196448 |
T |
|
| Q |
274 |
aatctttccttcctcaattttgagaaccaaacat |
307 |
Q |
| |
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|||||||||||||||| | | | ||||||||||| |
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| T |
13196447 |
aatctttccttcctcattctcgcgaaccaaacat |
13196414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 34721792 - 34721744
Alignment:
| Q |
312 |
ttaaaattgcttttaaaaaggattctcaagtaatagtgcttacaattat |
360 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34721792 |
ttaaagttgcttttaaaaaggattctcaagtaatagtgcttacaattat |
34721744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 34081848 - 34081957
Alignment:
| Q |
168 |
aaagatttttaggcgtggttcgcacatttctttctttcctctttaattgttcccttgaaccaaactgtggaacaattcttgttttccgtactttccatcc |
267 |
Q |
| |
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|||| ||| ||||||||| || ||||| ||||||||||| | | |||||| ||||||||||||||||||||||||| ||| ||||| |||||||||| |
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| T |
34081848 |
aaaggtttctaggcgtgggtcccacataactttctttcctttctcattgtttccttgaaccaaactgtggaacaatttttggtttcccagctttccatcc |
34081947 |
T |
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| Q |
268 |
attcccaatc |
277 |
Q |
| |
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| || ||||| |
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| T |
34081948 |
actctcaatc |
34081957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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