View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21560_low_20 (Length: 316)
Name: NF21560_low_20
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 4859526 - 4859234
Alignment:
| Q |
15 |
tcaaattcatcagcaagcatctgcagcacctcaataagtttattaacataaaataaaaataaggacataaacttcgggtgactaggccaagaaaacagat |
114 |
Q |
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| T |
4859526 |
tcaaattcatcagcaagcatctgcagcacctcaataagtttattaacataaaataaaaataaggacataaacttcgggtgactatgccaagaaaacagat |
4859427 |
T |
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| Q |
115 |
agcgcaaaactttaatctcgtttaaaaccatactaaaaaacacaattggataaaactattttgaatagaaaaataaagtgcaaagcaatgaaccaaacta |
214 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4859426 |
agcgcaaaactttaatctcgttaaaaaccatactaaaaaacacaattggataaaactattttgaatagaaaaataaagtgcaaagcaatgaaccaaacta |
4859327 |
T |
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| Q |
215 |
tactaacattttttgctgatcaaagagtagtttttgtagatcgggaggagaggaatgcgtatgtgttcttggttttgtgacatagagaattat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4859326 |
tactaacattttttgctgatcaaagagtagtttttgtagatcgggaggagaggaatgcgtatgtgttcttggttttgtgacatagagaattat |
4859234 |
T |
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