View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21560_low_23 (Length: 280)
Name: NF21560_low_23
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 42240245 - 42240485
Alignment:
| Q |
6 |
aggaacagagaaattggattggatagttgaatgagaagagattaagattaatt--tatgtgtcaagctgaggcagtgacataacaaatgaagttgatcat |
103 |
Q |
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| T |
42240245 |
aggaaaagagaaattggattggatagttgaatgagaagagattaagattaattattatgtgtcatgctgagg----------acaaatgaagttgatcat |
42240334 |
T |
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| Q |
104 |
ctaatatggttcaggtaatataaggcctaagagtttaggtagtaggttttagttttgtttgtattagattttatatttcaaattgacattatttaactgg |
203 |
Q |
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| T |
42240335 |
ctaatatggttcaggtaatataaggcctaagagtttaggtagtaggttttagttttgtttgtattagattttatatttcaaattgacattatttaactgg |
42240434 |
T |
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| Q |
204 |
taactgctatttggttatttctcttcaataaatactaaatagtactaccat |
254 |
Q |
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| T |
42240435 |
taactgctatttggttatttctcttcaataaatactaaatattactaccat |
42240485 |
T |
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