View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21560_low_28 (Length: 221)
Name: NF21560_low_28
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 33260887 - 33261073
Alignment:
| Q |
25 |
caataactttttctttctttgtcatccatttattgcaagcttgaaactattattaatcgaatatccatttttcagataactgaattttttcctttaacat |
124 |
Q |
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| T |
33260887 |
caataactttttctttctttgtcatccatttattgcaagcttgaaactattattaatcgaatatccattttttagataacttaattttttcctttaacat |
33260986 |
T |
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| Q |
125 |
aataacaataatatgaatgtataattatcaaaggaggatcaaattaagatccgtccaaattatattgctcttctcaattcacctatg |
211 |
Q |
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| T |
33260987 |
aataacaataatatgaatgtataattatcaaaggaggatcaaattaagatccgtccaaattatattgctcttctcaattcacctatg |
33261073 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 44377207 - 44377041
Alignment:
| Q |
42 |
tttgtcatccatttattgcaagcttgaaactattattaatcgaatatccattttt-cagataactgaattttttcctttaacataataacaataatatga |
140 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
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| T |
44377207 |
tttgccatccatttattgcaagcttgaaactattattaatggaatatccattttttcagataaccgaattttttcctttaacataataacaataatacga |
44377108 |
T |
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| Q |
141 |
atgtataattatcaaaggaggatcaaattaagatccgtccaaattatattgctcttctcaattcacc |
207 |
Q |
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| T |
44377107 |
atgtataattattaaagaaggatcaaattaagatccgtccaaattatattgctcttctcaattcacc |
44377041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 8113938 - 8113772
Alignment:
| Q |
42 |
tttgtcatccatttattgcaagcttgaaactattattaatcgaatatccattttt-cagataactgaattttttcctttaacataataacaataatatga |
140 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
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| T |
8113938 |
tttgtcatccatttattgtaagcttgaaactattattaatggaatatccattttttcagataaccgaattttttcctttaacataataacaataatacga |
8113839 |
T |
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| Q |
141 |
atgtataattatcaaaggaggatcaaattaagatccgtccaaattatattgctcttctcaattcacc |
207 |
Q |
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| T |
8113838 |
atgtataattattaaagaaggatcaaattaagatccgtccaaattatattgctcttctcaattcacc |
8113772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 8302555 - 8302710
Alignment:
| Q |
32 |
tttttctttctttgtcatccatttattgcaagcttgaaactattattaatcgaatatccattttt---------cagataactgaattttttcctttaac |
122 |
Q |
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| T |
8302555 |
tttttttttgtttgtcaaccatttagtgcaagcttgaaactattattaatcgaatatcttttttttttcttcttcacatagctgaattttttcctttaac |
8302654 |
T |
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| Q |
123 |
ataataacaataatatgaatgtataattatcaaaggaggatcaaattaagatccgtccaaatta |
186 |
Q |
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| T |
8302655 |
--------aataatatgaatgtataattatcaaaggagggtcaaattaagatccgtccaaatta |
8302710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 31 - 207
Target Start/End: Complemental strand, 41419335 - 41419159
Alignment:
| Q |
31 |
ctttttctttctttgtcatccatttattgcaagcttgaaactattattaatcgaatatccatttttcagataactgaattttttcctttaacataataac |
130 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||| |
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| T |
41419335 |
ctttttttttgtttgtcatccatttattgcaagcttgaaactattattaatggaatatccatttttcagataatcgaatttttttctttaacacaataac |
41419236 |
T |
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| Q |
131 |
aataatatgaatgtataattatcaaaggaggatcaaattaagatccgtccaaattatattgctcttctcaattcacc |
207 |
Q |
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||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41419235 |
aataatacgaatgtataattattaaagaaggatcaaattaaaatccgtccaaattatattgctcttctcaattcacc |
41419159 |
T |
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