View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21560_low_3 (Length: 727)

Name: NF21560_low_3
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21560_low_3
NF21560_low_3
[»] chr1 (1 HSPs)
chr1 (18-716)||(23811290-23811988)


Alignment Details
Target: chr1 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 18 - 716
Target Start/End: Original strand, 23811290 - 23811988
Alignment:
Q  18 aattcgcacaaacaagaattggaggcagaaaagcacaaataaaagaacacagtcaagaggcattttgattaaaacaggactaaatatagaacacagtcac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23811290 aattcgcacaaacaagaattggaggcagaaaagcacaaataaaagaacacggtcaagaggcattttgattaaaacaggactaaatatagaacacagtcac 23811389  T
Q  118 aaacaatagataatacgaaaaatccagataaattaacatatcatctatcagaatcactgaacacaagcaacatcagaaataaaatgaaaactacggcatc 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23811390 aaacaatagataatacgacaaatccagataaattaacatatcatctatcagaatcactgaacacaagcaacatcagaaataaaatgaaaactacggcatc 23811489  T
Q  218 atctcccatattaaccaatcttgtcgatttaaatcacctagagtaccctggactgcggcttatgctcctgctgtaactcctacctcgatcagggcttcta 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23811490 atctcccatattaaccaatcttgtcgatttaaatcaccttgagtaccctggactgcggcttatgctcctgctgtaactcctacctcgatcagggcttcta 23811589  T
Q  318 gatccataaggtgatctgtaaggggatctagagtatgaccgtctcctatacctttcgtctcttggtgagatggacctgaattataatggaacaggccata 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23811590 gatccataaggtgatctgtaaggggatctagagtatgaccgtctcctatacctttcgtctcttggtgagatggacctgaattataatggaacaggccata 23811689  T
Q  418 gtaagaaacaaatacaggaaatgatatacaccagaaataaagtcttaagtcacaagctaatccagtaacaaacctggaatatcgccttggtcttggtgaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23811690 gtaagaaacaaatacaggaaatgatatacaccagaaataaagtcttaagtcacaagctaatccagtaacaaacctggaatatcgccttggtcttggtgaa 23811789  T
Q  518 ggtgtatagtctggactacgagaataggttcgagcatagcgtggtgaacgagaacgacgacgtggagatcgcctataatcatgtgacctacgccagagat 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  23811790 ggtgtatagtctggactacgagaataggttcgagcatagcgtggtgaacgagaacgacgacgtggagatcgcctataatcatatgacctacaccagagat 23811889  T
Q  618 agattgaataggaaaattgaattagaaatacttcacaaataagatagacnnnnnnntgcaatcaaaattattattaacacttatattaactttgatatt 716  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||       |||||||||||||||||  ||||||||||||||||||||||||    
T  23811890 agattgaataggaaaattgaattagaaatacttcacaaatgagataaacaaaaaaatgcaatcaaaattattaccaacacttatattaactttgatatt 23811988  T

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