View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21560_low_4 (Length: 663)
Name: NF21560_low_4
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 1 - 645
Target Start/End: Complemental strand, 22776986 - 22776342
Alignment:
| Q |
1 |
tgaagaagaattgtctattgatgatttatctcaaagacaagacacagaaatcaaacacattgtttttgggatagcggcttcatcaaatttgtggaacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22776986 |
tgaagaagaattgtctattgatgatttatctcaaagacaagacacagagatcaaacacattgtttttgggatagcggcttcatcaaatttgtggaacata |
22776887 |
T |
|
| Q |
101 |
agaaaggaatacattaaggtatggtggaaacctaatgaaacaagaggggtggtgtggatggatcaaagagtgaagacacgtgatgatgaagatttaccag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22776886 |
agaaaggaatacattaaggtatggtggaaacataatgaaacaagaggggtggtgtggatggatcaaagagtgaagacacgtgatgatgaagatttaccag |
22776787 |
T |
|
| Q |
201 |
atattcaaatttcgggggacactagtagatttaagtatacaaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22776786 |
atattcaaatttcgggggacactagtagatttaagtatacgaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaa |
22776687 |
T |
|
| Q |
301 |
acttgggttggaggatgtgagatggttcatgatgggagatgatgatactgtatttatggttgataatgtggttagagttctttcaaaatatgatcatact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22776686 |
acttgggttggaggatgtgagatggttcatgatgggagatgatgatactgtgtttatggttgataatgtggttagagttctttcaaaatatgatcatact |
22776587 |
T |
|
| Q |
401 |
caattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtggaggatttgctataagctacc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22776586 |
caattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcgtatgctatggcttatggtggtggaggatttgctataagctacc |
22776487 |
T |
|
| Q |
501 |
ctttggctaaggagcttgcaaagatgcaggatcgttgtattcaacgttaccctgctttgtatggcagtgatgatagaatgcaagcttgcatggctgagct |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22776486 |
ctttggctaaggagcttgcaaagatgcaggatcgttgtattcaacgttaccctgctttgtatggcagtgatgatagaatgcaagcttgcatggctgagct |
22776387 |
T |
|
| Q |
601 |
aggtgttccattaaccaaggaagcagggtttcaccaggtagttaa |
645 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22776386 |
aggtgttccattaaccaaggaagcagggtttcaccaggtagttaa |
22776342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 640
Target Start/End: Complemental strand, 40945571 - 40944961
Alignment:
| Q |
30 |
ctcaaagacaagacacagaaatcaaacacattgtttttgggatagcggcttcatcaaatttgtggaacataagaaaggaatacattaaggtatggtggaa |
129 |
Q |
| |
|
||||||||||||| || || | ||||||||||||||||||||||| |||||||||||||| ||||| | |||||| |||||||| || ||||||||| |
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|
| T |
40945571 |
ctcaaagacaagatactgagctgaaacacattgtttttgggatagctgcttcatcaaatttatggaatacaagaaaagaatacatcaaaatatggtggag |
40945472 |
T |
|
| Q |
130 |
acctaatgaaacaagaggggtggtgtggatggatcaaagagtgaagacacgtgatgatgaagatttaccagatattcaaatttcgggggacactagtaga |
229 |
Q |
| |
|
||| || |||||||||| || || ||| | ||||||||||||| |||| | |||| ||||| ||||||| ||| || | |||||| || | |
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|
| T |
40945471 |
accaaaacaaacaagaggtgttgtttggttagatcaaagagtgagtacacaaaggaacgaagggttacctgatattcgaatctcagatgacacttctaaa |
40945372 |
T |
|
| Q |
230 |
tttaagtatacaaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttca |
329 |
Q |
| |
|
||| |||||||||||| |||||||| || || || || ||||| |||||| ||||||||||||||||||| ||||| ||| | ||||| |||||||| |
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|
| T |
40945371 |
tttcggtatacaaatcgacagggacaaaggtcagcattgaggatatcaagggttgtgacagagacattgaagcttggattgaaagatgtaagatggtttg |
40945272 |
T |
|
| Q |
330 |
tgatgggagatgatgatactgtatttatggttgataatgtggttagagttctttcaaaatatgatcatactcaattttattatgttggaagctcctctga |
429 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||||||||| |||||| |||||||||| ||||| |||| || |||||||||||||| || || ||||| |
|
|
| T |
40945271 |
tgatgggagatgatgatactgtttttgttgttgataatgttgttagaattctttcaaagtatgaccatagacatttttattatgttggtagttcttctga |
40945172 |
T |
|
| Q |
430 |
gagtcatgttcagaacatacatttctcttatgctatggcttatggtggtggaggatttgctataagctaccctttggctaaggagcttgcaaagatgcag |
529 |
Q |
| |
|
||||||||| ||||| || ||||| || ||||||||||| ||||||||||| |||||||||||||| || || ||||| |||| | || | |||||| |
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|
| T |
40945171 |
gagtcatgtccagaatattcatttttcatatgctatggcatatggtggtggtggatttgctataagttatccattggccgtggagttggctacgatgcaa |
40945072 |
T |
|
| Q |
530 |
gatcgttgtattcaacgttaccctgctttgtatggcagtgatgatagaatgcaagcttgcatggctgagctaggtgttccattaaccaaggaagcagggt |
629 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||| ||| | || |||||||| || | |
|
|
| T |
40945071 |
gatcgttgtattcagaggtaccctgctttgtatggtagtgatgatagaatgcaagcatgtatggctgagttaggtgtgccactcacaaaggaagctggat |
40944972 |
T |
|
| Q |
630 |
ttcaccaggta |
640 |
Q |
| |
|
|||| |||||| |
|
|
| T |
40944971 |
ttcatcaggta |
40944961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 393 - 645
Target Start/End: Original strand, 5180527 - 5180778
Alignment:
| Q |
393 |
atcatactcaattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtggaggatttgctat |
492 |
Q |
| |
|
|||||| ||||||||| || || |||| ||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||| ||| |
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|
| T |
5180527 |
atcataatcaattttactacgtcggaaactcctctgagagtcatgttcaaaacatacatttctcctattctatgacttatggtggtggaggatttgttat |
5180626 |
T |
|
| Q |
493 |
aagctaccctttggctaaggagcttgcaaagatgcaggatcgttgtattcaacgttaccctgctttgtatggcagtgatgatagaatgcaagcttgcatg |
592 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |||||||||| ||| | |||| |||||||| |||||||| | | ||||||||||||| |||| ||| |
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|
| T |
5180627 |
aagctgccctttggctaaagagcttgcaaatatgcaggatcattgcaatcaaagttaccctactttgtattgttataatgatagaatgcaggcttccata |
5180726 |
T |
|
| Q |
593 |
gctgagctaggtgttccattaaccaaggaagcagggtttcaccaggtagttaa |
645 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||| |||||||| |||| |||| |
|
|
| T |
5180727 |
gttgagctagg-attccattaaccaaggaagcagagtttcacctggtaattaa |
5180778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 385 - 639
Target Start/End: Complemental strand, 41319944 - 41319690
Alignment:
| Q |
385 |
aaaatatgatcatactcaattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtggagga |
484 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||| | ||||| |||||| | ||||| || || || |||| |||||||||||||||||| ||| |
|
|
| T |
41319944 |
aaaatacgatcataatcaattttattacattggaagtttatctgaaagtcatttgcagaatattttcttttcctatggtatggcttatggtggtggtgga |
41319845 |
T |
|
| Q |
485 |
tttgctataagctaccctttggctaaggagcttgcaaagatgcaggatcgttgtattcaacgttaccctgctttgtatggcagtgatgatagaatgcaag |
584 |
Q |
| |
|
|||||||||||||| |||||||| || | |||| || ||||||||||| ||||||||||| || || | ||||||||| |||||||||||||| | |
|
|
| T |
41319844 |
tttgctataagctatcctttggcgaaagcgcttcacaaaatgcaggatcggtgtattcaacggtatccaggattgtatggctcagatgatagaatgcatg |
41319745 |
T |
|
| Q |
585 |
cttgcatggctgagctaggtgttccattaaccaaggaagcagggtttcaccaggt |
639 |
Q |
| |
|
|||| |||||||| || ||||||||| | || || ||| | |||||||||||||| |
|
|
| T |
41319744 |
cttgtatggctgaactcggtgttccactcactaaagaaacggggtttcaccaggt |
41319690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 386 - 639
Target Start/End: Original strand, 11092000 - 11092253
Alignment:
| Q |
386 |
aaatatgatcatactcaattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtggaggat |
485 |
Q |
| |
|
||||||||||||| |||||||||||| |||| || || ||||||||| | ||||| || |||| |||||| |||||||||||||||||| |||| |
|
|
| T |
11092000 |
aaatatgatcataatcaattttattacattggtagtaattcagagagtcatttgcagaatatttatttttcttataatatggcttatggtggtggtggat |
11092099 |
T |
|
| Q |
486 |
ttgctataagctaccctttggctaaggagcttgcaaagatgcaggatcgttgtattcaacgttaccctgctttgtatggcagtgatgatagaatgcaagc |
585 |
Q |
| |
|
|||||||||| || ||||||||| | | | || ||||| ||| | ||||||||| | || |||| ||||||||| ||||||||| || ||||| |
|
|
| T |
11092100 |
ttgctataagttatcctttggctgttgctttggagaaaatgcaagataggtgtattcaaaggtatcctggtttgtatggttctgatgataggattcaagc |
11092199 |
T |
|
| Q |
586 |
ttgcatggctgagctaggtgttccattaaccaaggaagcagggtttcaccaggt |
639 |
Q |
| |
|
||| ||||||||||| ||| ||||| | |||||||| ||||||||| ||||| |
|
|
| T |
11092200 |
ttgtatggctgagcttggtattccacttaccaaggagaaagggtttcatcaggt |
11092253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 428 - 640
Target Start/End: Original strand, 2619329 - 2619541
Alignment:
| Q |
428 |
gagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtggaggatttgctataagctaccctttggctaaggagcttgcaaagatgc |
527 |
Q |
| |
|
||||||||| | ||||| ||| |||| ||||||| |||||||||||||||||| ||||||||||| || || |||||| || | || | || |||| |
|
|
| T |
2619329 |
gagagtcatttgcagaatatatatttttcttatggtatggcttatggtggtggtggatttgctattagttatggtttggcaaaagctctagtgaaaatgc |
2619428 |
T |
|
| Q |
528 |
aggatcgttgtattcaacgttaccctgctttgtatggcagtgatgatagaatgcaagcttgcatggctgagctaggtgttccattaaccaaggaagcagg |
627 |
Q |
| |
|
|||||||||||||||| | || || | | ||||| ||||||| ||||||||||||| |||||||| || ||||||||| | || |||||| || |
|
|
| T |
2619429 |
aggatcgttgtattcatagatatccaggactttatggttctgatgatcgaatgcaagcttgtatggctgaacttggtgttccacttacaaaggaaatcgg |
2619528 |
T |
|
| Q |
628 |
gtttcaccaggta |
640 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2619529 |
ttttcaccaggta |
2619541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 508
Target Start/End: Complemental strand, 29613154 - 29613096
Alignment:
| Q |
450 |
atttctcttatgctatggcttatggtggtggaggatttgctataagctaccctttggct |
508 |
Q |
| |
|
|||| |||||| |||||||||||||||||| ||||||||||| || || ||||||||| |
|
|
| T |
29613154 |
atttttcttataatatggcttatggtggtggtggatttgctattagttatcctttggct |
29613096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 544
Target Start/End: Complemental strand, 44196636 - 44196595
Alignment:
| Q |
503 |
ttggctaaggagcttgcaaagatgcaggatcgttgtattcaa |
544 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| |||| |
|
|
| T |
44196636 |
ttggctaaagagcttgcaaatatgcaggatcgttgtaatcaa |
44196595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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