View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21560_low_6 (Length: 569)
Name: NF21560_low_6
Description: NF21560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21560_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 13 - 551
Target Start/End: Complemental strand, 14774531 - 14773993
Alignment:
| Q |
13 |
atgaagagagaaagtgaagaaatttttgataagggaagtttggtttattgggtgacagttatggctaatgtggtgacgtggcaattttgttttatgggaa |
112 |
Q |
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| T |
14774531 |
atgaagagagaaagtgaagaaatttttgataagggaagtttggtttattgggtgacagttatggctaatgtggtgacgtggcagttttgttttatgggaa |
14774432 |
T |
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| Q |
113 |
ctgctggaatggtgtttctgacatcttcattaactggtgggatttgtatgacagctttgttgtctatgaatgtgttgggaggtgttttggtgtttagaga |
212 |
Q |
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| T |
14774431 |
ctgctggaatggtgtttttgacatcttcattaactggtgggatttgtatgacagctttgttgtctatgaatgtgttgggaggtgttttggtgtttagaga |
14774332 |
T |
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| Q |
213 |
tgcatttggtggtgttaaggctgtttcaactgttttgtgcatgtggggattctgttcttatgtttatggtatgtatgttaagatgttggaagagaaaggt |
312 |
Q |
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| T |
14774331 |
tgcatttggtggtgttaaggctgtttcaactgttttgtgcatgtggggattctgttcttatgtttatggtatgtatgttaagatgttggaagagaaaggt |
14774232 |
T |
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| Q |
313 |
agaatgaagaaccagaatgagtcttctactgagatgatttatatgaataatcataatgtgtttgattgaaaaagtaatacatttgtatgaagttgatctc |
412 |
Q |
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| T |
14774231 |
agaatgaagaaccagaatgagtcttctactgagatgatttatatgaataatcatcatgtgtttgattgaaaaagtaatacatttgtatgaagttgatctc |
14774132 |
T |
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| Q |
413 |
ttagctagtttgattaggagtaggactcaaggtaacttgggttgtttaattacatgtgaaaattaattagtgatattcttattattaaatggacttgta- |
511 |
Q |
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| T |
14774131 |
ttagctagtttgattaggagtaggactcaaggtaacttgggttgtttaattacatgtgaaa----attagttatattcttattattaaatggacttgtat |
14774036 |
T |
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| Q |
512 |
---taacaattgttgaaatagatggttgaattggatctatacc |
551 |
Q |
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| T |
14774035 |
aactaacaattgttgaaatagatggttgaattggatctatacc |
14773993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 14782408 - 14782110
Alignment:
| Q |
13 |
atgaagagagaaagtgaagaaatttttgataagggaagtttggtttattgggtgacagttatggctaatgtggtgacgtggcaattttgttttatgggaa |
112 |
Q |
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| T |
14782408 |
atgaagagagaaagtgaggaggtttttgacaagggaagtagggtttattgggtgacggttatggctaatgtcgtgacgtggcagttttgttttatgggga |
14782309 |
T |
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| Q |
113 |
ctgctggaatggtgtttctgacatcttcattaactggtgggatttgtatgacagctttgttgtctatgaatgtgttgggaggtgttttggtgtttagaga |
212 |
Q |
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| T |
14782308 |
ctgctgggatggtgtttttgacatcttcattaactggtgggatttgcatgacagctttgttgtctatgaatgtgttgggtggtgttatagtttatagaga |
14782209 |
T |
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| Q |
213 |
tgcatttggtggtgttaaggctgtttcaactgttttgtgcatgtggggattctgttcttatgtttatggtatgtatgttaagatgttggaagagaaagg |
311 |
Q |
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| T |
14782208 |
tgcatttggtggtttgaaagctgtttcaactgttttgtgtatgtggggattttgttcttatgtttatggtatgtatgttaagatgttggaagagaaagg |
14782110 |
T |
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