View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21561_high_1 (Length: 467)
Name: NF21561_high_1
Description: NF21561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21561_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 55011892 - 55012353
Alignment:
| Q |
1 |
actagtaattttagtcactactacttaccatgtttagtcgttactttaagaaaaaatgatgattttgacaattccctttatttttgtcatcacttcacgt |
100 |
Q |
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| T |
55011892 |
actagtaattttagtcgctactacttaccatgtttagtcgttactttaagaaaaaatgatgattttgacatttccctttatttttgtcatcacttcac-- |
55011989 |
T |
|
| Q |
101 |
tcactacaaaggtttatgtaaaataaaagtgcattttgaaca-aaaaatttccgtgtgattatgtggaccacttcgtatcctcgaagtccgtgaatttca |
199 |
Q |
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| T |
55011990 |
----tacaaaggtttatgtaaaataaaagtgcattttgaacacaaaaatttccgtgtgattatgtggaccacttcgtatcctcaaagtccgtgaatttca |
55012085 |
T |
|
| Q |
200 |
tcggcattgcaactgtcttcaaaataaatgccatactccatttcgttactttaccatttccttaactgt---gtatactagtacgtcccccacgcgccaa |
296 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
55012086 |
tcggcattgcaactgtcttctaaataaatgcaatactccatttcgttactttaccatttccttaactgtgtagtatactagtacgtcacccacgcgccaa |
55012185 |
T |
|
| Q |
297 |
acatggcagtgttactcatcttccatccaatttttaaaatgagaattcttttcacttttgtttaatcttcaaaaatgt---------tca-------cct |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |
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| T |
55012186 |
acatggcagtgttactcatcttccatccaatttttaaaatgagaattcttttcacttttgtttaatcttcaaaatattagatagatatcaaaaaatgact |
55012285 |
T |
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| Q |
381 |
aattaaaaacattgtactattaggtgggtgacccaatctcagaccacaactgttgggagaggccagaa |
448 |
Q |
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| T |
55012286 |
aattaaaaacattgtactattaggtgggtgacccaatctcagaccacaactgttgggagaggccagaa |
55012353 |
T |
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