View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21561_low_2 (Length: 466)
Name: NF21561_low_2
Description: NF21561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21561_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 56 - 447
Target Start/End: Original strand, 55011948 - 55012353
Alignment:
| Q |
56 |
tgatgattttgacaattccctttatttttgtcatcacttcacgttcactacaaaggtttatgtaaaataaaagtgcattttgaaca-aaaaatttccgtg |
154 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
55011948 |
tgatgattttgacatttccctttatttttgtcatcacttcac------tacaaaggtttatgtaaaataaaagtgcattttgaacacaaaaatttccgtg |
55012041 |
T |
|
| Q |
155 |
tgattatgtggaccacttcgtatcctcgaagtccgtgaatttcatcggcattgcaactgtcttcaaaataaatgccatactccatttcgttactttacca |
254 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
55012042 |
tgattatgtggaccacttcgtatcctcaaagtccgtgaatttcatcggcattgcaactgtcttctaaataaatgcaatactccatttcgttactttacca |
55012141 |
T |
|
| Q |
255 |
tttccttaactgt---gtatactagtacgtcccccacgcgccaaacatggcagtgttactcatcttccatccaatttttaaaatgagaattcttttcact |
351 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55012142 |
tttccttaactgtgtagtatactagtacgtcacccacgcgccaaacatggcagtgttactcatcttccatccaatttttaaaatgagaattcttttcact |
55012241 |
T |
|
| Q |
352 |
tttgtttaatcttcaaaaatgt---------tca-------cctaattaaaaacattgtactattaggtgggtgacccaatctcagaccacaactgttgg |
435 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55012242 |
tttgtttaatcttcaaaatattagatagatatcaaaaaatgactaattaaaaacattgtactattaggtgggtgacccaatctcagaccacaactgttgg |
55012341 |
T |
|
| Q |
436 |
gagaggccagaa |
447 |
Q |
| |
|
|||||||||||| |
|
|
| T |
55012342 |
gagaggccagaa |
55012353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University