View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21561_low_3 (Length: 460)
Name: NF21561_low_3
Description: NF21561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21561_low_3 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 442
Target Start/End: Original strand, 52490886 - 52491303
Alignment:
| Q |
13 |
aaaatgaaattctagtgacaatacaatcaaaagtaataatatgattaaactaatcaacatttagcataatgtcttcagaagcaaacttgcatgatgtttt |
112 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52490886 |
aaaatgaaattctagtaacaatacaatcaaaagtaataatatgattaaactaatcaacatttagcataatgtcttcagaagcaaacttgc---------- |
52490975 |
T |
|
| Q |
113 |
gcataatgaatcacccatttcctgcgataaacttgcacaaccttcccttcacgtcctttgaaggttcctctcacaacctgaacttcatcctccttacgaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52490976 |
--ataatgaatcacccatttcctgcgataaacttgcacaaccttcccttcacgtcccttgaaggttcctctcacaacctgaacttcatcctccttacgaa |
52491073 |
T |
|
| Q |
213 |
cgggaagagaacgcacgttgtactttgaacgaaggtcaccagagagaggtgcgctaatcaacacacggcggacgtttgatggggctgtgaaatgaacctt |
312 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
52491074 |
cgggaagagaacgcacgatgtactttgaacgaaggtcaccagagagaggtgcgctaatcaacacacgacggacgtttgatggggcggtgaaatgaacctt |
52491173 |
T |
|
| Q |
313 |
gcggctcttgcgacagctgcttgaaagaagaagaaacatggatgaatcaattgcagatctgaannnnnnncgtattactcttctatgaaatcgtgaggaa |
412 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52491174 |
gcggctcttgtgacagctgcttgaaagaagaagaaacgtggatgaatgaattgcagatctgaatttttttcgtattactcttctatgaaatcgtgaggaa |
52491273 |
T |
|
| Q |
413 |
gaataatggaagcaaagaagaaggaaaaca |
442 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52491274 |
gaataatggaagcaaagaagaaggaaaaca |
52491303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 2468618 - 2468499
Alignment:
| Q |
118 |
atgaatcacccatttcctgcgataaacttgcacaaccttcccttcacgtcctttgaaggttcctctcacaacctgaacttcatcctccttacgaacggga |
217 |
Q |
| |
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|||||||||||||||||| | |||||||||||||| || |||||||||||| ||||||||||||| || ||||||| ||| ||||| ||||| ||| |
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| T |
2468618 |
atgaatcacccatttccttcaataaacttgcacaatctccccttcacgtcccttgaaggttcctccca-----tgaacttaatcatccttgcgaacagga |
2468524 |
T |
|
| Q |
218 |
agagaacgcacgttgtactttgaac |
242 |
Q |
| |
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||||||||| |||||||||||||| |
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| T |
2468523 |
tgagaacgcatgttgtactttgaac |
2468499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 2468868 - 2468780
Alignment:
| Q |
13 |
aaaatgaaattctagtgacaatacaatcaaaagtaataatatgattaaactaatcaacatttagcataatgtcttcagaagcaaacttg |
101 |
Q |
| |
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||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||| |
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| T |
2468868 |
aaaatcaaattctagaaacaatacaaccaaaagtaataatatgattaaactaatcaacgttttgcataatgtcttcaggagaaaacttg |
2468780 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 118 - 338
Target Start/End: Complemental strand, 5404425 - 5404205
Alignment:
| Q |
118 |
atgaatcacccatttcctgcgataaacttgcacaaccttcccttcacgtcctttgaaggttcctctcacaacctgaacttcatcctccttacgaacggga |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || || ||||||||| |
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| T |
5404425 |
atgaatcacccatttcctgcgataaacttgcacaaccttcccttcacgtcccttgaaggttcctctcacaacctgcacttcatcatctttgcgaacggga |
5404326 |
T |
|
| Q |
218 |
agagaacgcacgttgtactttgaacgaaggtcaccagagagaggtgcgctaatcaacacacggcggacgtttgatggggctgtgaaatgaaccttgcggc |
317 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||| |||||| |||||||||| ||||||||| ||||||||| |
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| T |
5404325 |
agagaacgcacgttgtactttgaacggaggtcaccggaaagaggtgcgctcatcaacacacgacggacgcttgatggggcggtgaaatgagccttgcggc |
5404226 |
T |
|
| Q |
318 |
tcttgcgacagctgcttgaaa |
338 |
Q |
| |
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||||||||| ||||||||||| |
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| T |
5404225 |
tcttgcgacggctgcttgaaa |
5404205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 5404675 - 5404587
Alignment:
| Q |
13 |
aaaatgaaattctagtgacaatacaatcaaaagtaataatatgattaaactaatcaacatttagcataatgtcttcagaagcaaacttg |
101 |
Q |
| |
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||||| || ||||||| ||||||||| |||||||||||||| ||||||| |||||||| ||| ||||||||||||||| |||||||||| |
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| T |
5404675 |
aaaatcaagttctagtaacaatacaaccaaaagtaataataggattaaattaatcaacgttttgcataatgtcttcaggagcaaacttg |
5404587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 338
Target Start/End: Original strand, 42219705 - 42219925
Alignment:
| Q |
118 |
atgaatcacccatttcctgcgataaacttgcacaaccttcccttcacgtcctttgaaggttcctctcacaacctgaacttcatcctccttacgaacggga |
217 |
Q |
| |
|
|||||| |||||||| ||||||||||||| || | || |||||||| |||||||| |||||||| || || ||||||||||| || || ||||| || |
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|
| T |
42219705 |
atgaataacccattttttgcgataaacttgaacgattttaccttcacggcctttgaatgttcctctaacgacttgaacttcatcgtctttgcgaactggt |
42219804 |
T |
|
| Q |
218 |
agagaacgcacgttgtactttgaacgaaggtcaccagagagaggtgcgctaatcaacacacggcggacgtttgatggggctgtgaaatgaaccttgcggc |
317 |
Q |
| |
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| ||||| |||||||| || || || || || ||||| |||||||| || | ||||||||||| |||||||||| |||||||| |||| || | |
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| T |
42219805 |
atggaacggacgttgtatttggatcggagatcggtggagagtggtgcgctcattatcacacggcggagacttgatggggccgtgaaatgcgcctttcgac |
42219904 |
T |
|
| Q |
318 |
tcttgcgacagctgcttgaaa |
338 |
Q |
| |
|
|||| || | ||||||||||| |
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|
| T |
42219905 |
tctttcggcggctgcttgaaa |
42219925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 183 - 375
Target Start/End: Original strand, 30927048 - 30927232
Alignment:
| Q |
183 |
tcacaacctgaacttcatcctccttacgaacgggaagagaacgcacgttgtactttgaacgaaggtcaccagagagaggtgcgctaatcaacacacggcg |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||| || |
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|
| T |
30927048 |
tcacaacctgaacttcatcctccttacgaacgggaagagaatgcacgttgtactttgaaagaaggtcaccggagagaggttcgctcatcaacacacgacg |
30927147 |
T |
|
| Q |
283 |
gacgtttgatggggctgtgaaatgaaccttgcggctcttgcgacagctgcttgaaagaagaagaaacatggatgaatcaattgcagatctgaa |
375 |
Q |
| |
|
||| ||||| ||| |||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
30927148 |
gac-tttga-------aagaaggtcaccttgcggctcttccgacggttgcttgaaagaagaagaaacatggatgaatgaattgcatatctgaa |
30927232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 26365328 - 26365376
Alignment:
| Q |
118 |
atgaatcacccatttcctgcgataaacttgcacaaccttcccttcacgt |
166 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26365328 |
atgaatcatccatttcctgccataaacttgcacaaccttcccttcacgt |
26365376 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 269 - 435
Target Start/End: Complemental strand, 21946304 - 21946136
Alignment:
| Q |
269 |
atcaacacacggcggacgtttgatggggctgtgaaatgaaccttgcggctcttgcgacagctgcttgaaagaagaagaaacatggatgaatcaattgcag |
368 |
Q |
| |
|
||||||||||| |||||||||| || ||| || ||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
21946304 |
atcaacacacgacggacgtttggtgtggcggtaaaatgaaccttgcggctcttgcgacggatgcttgaaagaagaagaaacatggctgaatgaattgcat |
21946205 |
T |
|
| Q |
369 |
atctgaa--nnnnnnncgtattactcttctatgaaatcgtgaggaagaataatggaagcaaagaagaag |
435 |
Q |
| |
|
||||||| | |||| |||||||||| | | ||||| ||||||||||||||||||||||||| |
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|
| T |
21946204 |
atctgaatttttttttcttatttctcttctatggagttgtgagaaagaataatggaagcaaagaagaag |
21946136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 45229144 - 45229096
Alignment:
| Q |
118 |
atgaatcacccatttcctgcgataaacttgcacaaccttcccttcacgt |
166 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45229144 |
atgaatcacccatttcctgccataaacttgcacaaccttcccttcacgt |
45229096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 39837 - 39928
Alignment:
| Q |
10 |
aagaaaatgaaattctagtgacaatacaatcaaaagtaataatatgattaaactaatcaacatttagcataatgtcttcagaagcaaacttg |
101 |
Q |
| |
|
|||||||| || ||||||| ||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||||||| |
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|
| T |
39837 |
aagaaaatcaagttctagtaacaatacaaccaaaagtaataatataattaaactaatcaacgttttgcataatgtcttcaggagcaaacttg |
39928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 27447521 - 27447430
Alignment:
| Q |
10 |
aagaaaatgaaattctagtgacaatacaatcaaaagtaataatatgattaaactaatcaacatttagcataatgtcttcagaagcaaacttg |
101 |
Q |
| |
|
|||||||| || ||||||| ||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||||||| |
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|
| T |
27447521 |
aagaaaatcaagttctagtaacaatacaaccaaaagtaataatataattaaactaatcaacgttttgcataatgtcttcaggagcaaacttg |
27447430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 321
Target Start/End: Original strand, 3085460 - 3085630
Alignment:
| Q |
151 |
aaccttcccttcacgtcctttgaaggttcctctcacaacctgaacttcatcctccttacgaacgggaagagaacgcacgttgtactttgaacgaaggtca |
250 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| | |||||||||||||| || || || ||||| || | ||||| ||||||||||| || || || || |
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|
| T |
3085460 |
aaccttaccttcacggcctttgaatgttccacgaacaacctgaacttcgtcgtctttgcgaacaggcattgaacggacgttgtacttggatcggagatcg |
3085559 |
T |
|
| Q |
251 |
ccagagagaggtgcgctaatcaacacacggcggacgtttgatggggctgtgaaatgaaccttgcggctctt |
321 |
Q |
| |
|
| ||||| |||||||| || || |||||||||||| ||||||| || ||||||||| |||| |||||||| |
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|
| T |
3085560 |
gcggagagtggtgcgctcattaagacacggcggacgcttgatggcgccgtgaaatgagccttacggctctt |
3085630 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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