View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21561_low_4 (Length: 434)
Name: NF21561_low_4
Description: NF21561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21561_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 23 - 421
Target Start/End: Complemental strand, 45285566 - 45285168
Alignment:
| Q |
23 |
agagcagccttctttctcagcctatgttcgcggtgtctccttattttgtcctccaatgctgctttaccattctcagctaactcagctctgctgatagcct |
122 |
Q |
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| T |
45285566 |
agagcagccttctttctcagcctatgttcgcggtgtctccttattttgtcctccaatgctgctttaccattctcagctaactcagctctgctgatagcct |
45285467 |
T |
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| Q |
123 |
gttcggcacgagtcctcatctctgaaatcttcaatgatgcattttcaagctcctttttcatcaatgctaactctatctggtttccttttttatttccttt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45285466 |
gttcggcacgagtcctcatctctgaaatcttcaatgatgcattttcaagctcctttttcatcaatgctaactctatctggtttccttttttatttccttt |
45285367 |
T |
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| Q |
223 |
ctggacttctttaatcatgtagttgtaatcttccaaagagattgtgatactgtcattgttttcttcagcttcaccctttgagtgatcagtgatatatcca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45285366 |
ctggacttctttaatcatgtagttgtaatcttccaaagagattgtgatactgtcattgttttcttcagcttcaccctttgagtgatcagtgatatatcca |
45285267 |
T |
|
| Q |
323 |
tccttataagccaacctatattcttgaagatgagatttcagcaatgcaatctctacctgtgcatcaatgtctctctcctcattcgtcttcaactcttct |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45285266 |
tccttataagccaacctatattcttgaagatgagatttcagcaatgcaatctctacctgtgcatcaatgtctctctccttattcgtcttcaactcttct |
45285168 |
T |
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