View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21561_low_7 (Length: 243)
Name: NF21561_low_7
Description: NF21561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21561_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 48868346 - 48868135
Alignment:
| Q |
19 |
cattcaccaccccactctttcctcttcttgtgtactccaatcgttccagaatcatcatcatccactctttcagaaattaggggatttaaaattccaaaca |
118 |
Q |
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| T |
48868346 |
cattcaccaccccactctttcctcttcttgtgtactccaatcgttctagaatcatcatcatccactctttcagaaattaggg-atttaaaattccaaaca |
48868248 |
T |
|
| Q |
119 |
acacatatttgaagaaccccaattttggtctctaactggagcaccactgtcagtgctatctactgccaacgtaccaccactctcaactctcactagcaac |
218 |
Q |
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|||||||||||||| ||||||||||||||||| || |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
48868247 |
acacatatttgaaggaccccaattttggtctccaattggagcaccactgtcaccgctatctaacgccaacgtaccaccactctcaactctcactagcgac |
48868148 |
T |
|
| Q |
219 |
gaaccgctcttca |
231 |
Q |
| |
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||||||||||||| |
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| T |
48868147 |
gaaccgctcttca |
48868135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 17288131 - 17287942
Alignment:
| Q |
19 |
cattcaccaccccactctttcctcttcttgtgtactccaatcgttccagaatcatcatcatccactctttcagaaattaggggatttaaaattccaaaca |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17288131 |
cattcaccaccccactctttcctcttcttgtgtactccaatcgttctagaatcatcatcatccactctttcagaaattaggg-atttaaaattccaaaca |
17288033 |
T |
|
| Q |
119 |
acacatatttgaagaaccccaattttggtctctaactggagcaccactgtcagtgctatctactgccaacgtaccaccactctcaactctc |
209 |
Q |
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| T |
17288032 |
acacatatttgaagaaccccaattttggtctctaattggagcaccactgtcaccgctatctaacgctaacgtaccaccactctcaactctc |
17287942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 7195993 - 7196062
Alignment:
| Q |
19 |
cattcaccacccc-actctttcctcttcttgtgtactccaatcgttccagaatcatcatcatccactctt |
87 |
Q |
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||||||||||||| ||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||| |
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| T |
7195993 |
cattcaccacccccactctttccacttcctgtgtactccaatcgtcccagtatcatcatcatccactctt |
7196062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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