View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21562_high_17 (Length: 453)
Name: NF21562_high_17
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 63 - 243
Target Start/End: Original strand, 44407588 - 44407768
Alignment:
| Q |
63 |
atttattttttggtcaagtagtcaaatggctgaagctcaaacattttaacgtggagaattgtggtgtcgagagttcaaactcctgctccagcatatataa |
162 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
44407588 |
atttatttttttatcaagtagtcaagtggctgaagctcacacattttaatgtggagaattgaggtgtcgagagttcgaactcctgccccaacatatataa |
44407687 |
T |
|
| Q |
163 |
tatattacccctatcaactgagctaagctcctagtgacgactgagaaaattatttctattgtatgtattttttagtgtact |
243 |
Q |
| |
|
| ||||| || ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44407688 |
tgtattatccatatcaactgagctaaactcgtagtgacgactgagaaaattatttctattgtatgtattttttagtgtact |
44407768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 44407841 - 44407957
Alignment:
| Q |
315 |
gaagaacaaaaattgattgcaagctgtgttgaagaagtgagggaacccgcaaacgaaacacaaattgggctgctaataacaaaagtaaaacaccctagaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44407841 |
gaagaacaaaaattgattgcaagctgtgttgaagaagtgagggaacccgcaaacgcaacacaaattgggctgctaataacaaaagtaaaacaccctagaa |
44407940 |
T |
|
| Q |
415 |
gcttctactcggcaact |
431 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
44407941 |
gcttctattcggcaact |
44407957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 44615818 - 44615767
Alignment:
| Q |
60 |
tttatttattttttggtcaagtagtcaaatggctgaagctcaaacattttaa |
111 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| |||| ||||||||| |
|
|
| T |
44615818 |
tttatttattttttggtcaagtagtttagtggctgaaactcacacattttaa |
44615767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 39234675 - 39234742
Alignment:
| Q |
63 |
atttattttttggtcaagtagtcaaatggctgaagctcaaacattttaacgtggagaattgtggtgtc |
130 |
Q |
| |
|
||||||||||||||| ||||| | |||| ||||||||| |||||| ||||||||||| || |||||| |
|
|
| T |
39234675 |
atttattttttggtctagtagcctaatgattgaagctcacacatttaaacgtggagaagtggggtgtc |
39234742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University