View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21562_high_18 (Length: 439)

Name: NF21562_high_18
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21562_high_18
NF21562_high_18
[»] chr2 (4 HSPs)
chr2 (289-414)||(31902262-31902387)
chr2 (289-381)||(12793612-12793704)
chr2 (289-381)||(18681173-18681265)
chr2 (289-381)||(915334-915426)
[»] chr7 (4 HSPs)
chr7 (289-420)||(46133118-46133249)
chr7 (43-140)||(19494992-19495090)
chr7 (289-381)||(38485663-38485755)
chr7 (313-381)||(9349841-9349909)
[»] chr1 (3 HSPs)
chr1 (289-381)||(2988000-2988092)
chr1 (289-381)||(4651887-4651979)
chr1 (289-346)||(35250192-35250249)
[»] chr3 (2 HSPs)
chr3 (298-381)||(30935270-30935353)
chr3 (298-358)||(1652790-1652850)
[»] chr5 (2 HSPs)
chr5 (295-420)||(36979029-36979153)
chr5 (291-381)||(31721787-31721877)
[»] chr8 (4 HSPs)
chr8 (289-381)||(10552375-10552467)
chr8 (289-381)||(35062565-35062657)
chr8 (299-376)||(30236013-30236090)
chr8 (304-381)||(32945585-32945662)
[»] chr4 (4 HSPs)
chr4 (289-381)||(43373975-43374067)
chr4 (299-381)||(19432160-19432242)
chr4 (170-230)||(19473036-19473096)
chr4 (289-358)||(35800597-35800666)
[»] chr6 (3 HSPs)
chr6 (289-380)||(12794212-12794303)
chr6 (292-381)||(26215899-26215989)
chr6 (146-225)||(28963550-28963630)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 289 - 414
Target Start/End: Complemental strand, 31902387 - 31902262
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatgtgt 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||| | ||||    
T  31902387 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtgactcagtgttggtgttgaggacttggttctcttttacaaggtgt 31902288  T
Q  389 tcgattagtagtagcgacgagtgttt 414  Q
    ||| |||||||| |||||||||||||    
T  31902287 tcggttagtagtggcgacgagtgttt 31902262  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 12793704 - 12793612
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |  ||||||||||||    
T  12793704 aggttgtgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcggtgttggtgatgagaagtaagttctcttttac 12793612  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 18681173 - 18681265
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    |||||||  ||||| | |||||||||||||||||||||||||| |||||||||||||||   |||||||| |||||||| |||||||||||||    
T  18681173 aggttgcacggtggtgaaagctgaatgatctttagagaaggagctcttcggatgtggctcaatgttggtgatgaggactaggttctcttttac 18681265  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 915426 - 915334
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    |||||||| ||||| ||||||| |||||| || ||| |||||||||||||||||| |||  ||||||||| |||||| | |||||||| ||||    
T  915426 aggttgcgcggtggtggaagctcaatgattttaagaaaaggagttcttcggatgttgctcagtgttggtgatgaggattgggttctctattac 915334  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 46133249 - 46133118
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatgtgt 388  Q
    |||||||||||||||||||||||| ||||||||||| || |||||||| ||||||| || |||||||||| ||| |||| ||||||||||||| | ||||    
T  46133249 aggttgcgtggtgggggaagctgattgatctttagataaagagttctttggatgtgactcggtgttggtgatgatgactgggttctcttttacaaggtgt 46133150  T
Q  389 tcgattagtagtagcgacgagtgttttggatg 420  Q
    | | | |||||| || ||||||||||||||||    
T  46133149 ttggtgagtagtggcaacgagtgttttggatg 46133118  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 19494992 - 19495090
Alignment:
Q  43 tatgtatgatgtatgattagaatctgagctataacagaatga--ttttttatgttgtcacgatcaaaacatcactatggttttaggatacatgatgtatc 140  Q
    |||||||||||||||||| ||||||||||||||||| |||||  ||||||||||||||||||||||| ||| ||||||||||| ||||  ||||||||||    
T  19494992 tatgtatgatgtatgattggaatctgagctataacaaaatgattttttttatgttgtcacgatcaaatcataactatggtttt-ggatgtatgatgtatc 19495090  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 38485663 - 38485755
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    |||||||  ||||| |||||||||||||||||||||||||||||||||| |||||||||   |||||||| | ||||||||||||||||||||    
T  38485663 aggttgcacggtggtggaagctgaatgatctttagagaaggagttcttcagatgtggctcattgttggtgataaggacttggttctcttttac 38485755  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 9349841 - 9349909
Alignment:
Q  313 atgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||| |||| | |  ||||||||||||    
T  9349841 atgatatttagagaagaagttcttcggatgtggctcggtgttggtgatgagtattgtgttctcttttac 9349909  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 2988092 - 2988000
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    |||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  2988092 aggttgtgcggtggtggaagctgaatgatctttagggaaggagttcttcggatgtggctcggtgttggtgatgaggacatggttctcttttac 2988000  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 4651887 - 4651979
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||| || |||||||||||||||||||    
T  4651887 aggttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatggggacttggttctcttttac 4651979  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 35250249 - 35250192
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggc 346  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  35250249 aggttacgcggtggtggaagctgaatgatctttagagaaggagttcttcggaggtggc 35250192  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 298 - 381
Target Start/End: Complemental strand, 30935353 - 30935270
Alignment:
Q  298 ggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||  ||||||||||||    
T  30935353 ggtggtggaagctgaatgatctttagaaaaggagttcttcggatgtggctcggtgttggtgatgaggactgagttctcttttac 30935270  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 1652850 - 1652790
Alignment:
Q  298 ggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtg 358  Q
    ||||| ||||| ||||||||||||||| ||||||||| ||| || ||||| ||||||||||    
T  1652850 ggtggcggaagttgaatgatctttagaaaaggagttcctcgaatttggctcggtgttggtg 1652790  T

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Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 295 - 420
Target Start/End: Original strand, 36979029 - 36979153
Alignment:
Q  295 cgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatgtgttcgatt 394  Q
    ||||||||| |||||||||||||| ||| |||| |||||||| ||||||||||||||||||||  | |||||| |||||||||||| || ||||| | |     
T  36979029 cgtggtgggagaagctgaatgatcattaaagaatgagttctttggatgtggcttggtgttggtaataaggactaggttctctttta-caggtgttaggtg 36979127  T
Q  395 agtagtagcgacgagtgttttggatg 420  Q
    |||||| ||||| |||||||||||||    
T  36979128 agtagtggcgaccagtgttttggatg 36979153  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 31721787 - 31721877
Alignment:
Q  291 gttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    |||||| ||||| ||||| ||| |||||||||||||| |||||||| |||||||||| | ||||||||  |||||||  ||||||||||||    
T  31721787 gttgcgcggtggtggaagttgattgatctttagagaatgagttctttggatgtggctcgatgttggtgacgaggactgagttctcttttac 31721877  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 10552375 - 10552467
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||   ||||||| | |||||||| |||||||||||||    
T  10552375 aggttgcgttgtggtggaagctgaatgatctttagagaagaagttcttcggaggtggcacagtgttggagatgaggactgggttctcttttac 10552467  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 35062565 - 35062657
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||    |||||||| |||||||| |||||||||||||    
T  35062565 aggttgcgcggtggtggaaggtgaatgatctttagagaaggagttcttcggaggtggcacaatgttggtgatgaggactgggttctcttttac 35062657  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 30236090 - 30236013
Alignment:
Q  299 gtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctct 376  Q
    |||| ||||||||| ||||||||||| ||| ||||||| ||||||| || ||||||||| ||||||||| | ||||||    
T  30236090 gtggtggaagctgattgatctttagaaaagaagttctttggatgtgactcggtgttggtattgaggactggtttctct 30236013  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 32945662 - 32945585
Alignment:
Q  304 ggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    ||||||||||||||||||||| ||| |||||||| |||||| || |||||||||| ||| |||| | |||| ||||||    
T  32945662 ggaagctgaatgatctttagaaaagaagttcttcagatgtgactcggtgttggtgatgatgactggtttcttttttac 32945585  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 43374067 - 43373975
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    |||||||| ||||| ||||||||| ||||||||||| || ||||||||| || ||| || |||||||||| ||| |||||| |||||||||||    
T  43374067 aggttgcgcggtggtggaagctgattgatctttagaaaatgagttcttcagaggtgactcggtgttggtgatgatgacttgtttctcttttac 43373975  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 19432160 - 19432242
Alignment:
Q  299 gtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    |||| |||||||||||||| ||| ||  ||||||| ||||| |||| ||||||||||||| ||||||||   |||||||||||    
T  19432160 gtggtggaagctgaatgatatttggaagaggagttattcggttgtgacttggtgttggtgatgaggactgatttctcttttac 19432242  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 19473036 - 19473096
Alignment:
Q  170 ttggtgatattaatgtattttatagtagagagaacgatgaatgaatgattaaaatatatta 230  Q
    |||||||||||||||||||||| || ||||| || |||  |||||||||||||||| ||||    
T  19473036 ttggtgatattaatgtattttagaggagagaaaatgatacatgaatgattaaaataaatta 19473096  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 35800597 - 35800666
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtg 358  Q
    ||||| || ||||| |||| ||||||||||||| |  ||||||||||| |||||||||| | ||||||||    
T  35800597 aggtttcgcggtggtggaacctgaatgatctttggtaaaggagttctttggatgtggctcgttgttggtg 35800666  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 380
Target Start/End: Original strand, 12794212 - 12794303
Alignment:
Q  289 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctctttta 380  Q
    |||||||| ||||| |||||| || ||||||||||| ||||| |||||| |||||| || |||||||| |||||||||| | ||||||||||    
T  12794212 aggttgcgcggtggtggaagcagattgatctttagaaaaggatttcttcagatgtgactcggtgttggggttgaggactggtttctctttta 12794303  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 381
Target Start/End: Complemental strand, 26215989 - 26215899
Alignment:
Q  292 ttgcgtggtgggggaagctgaatgatctttagagaaggagtt-cttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 381  Q
    ||||| ||||| ||||||||| |||||||| || |||||||| ||||  ||||||||  ||||||||| |||||||| | |||||||||||    
T  26215989 ttgcgcggtggtggaagctgattgatctttggaaaaggagtttcttcaaatgtggctcagtgttggtgatgaggactagtttctcttttac 26215899  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 28963550 - 28963630
Alignment:
Q  146 ggtttcacttgagtgatataa-tttttggtgatattaatgtattttatagtagagagaacgatgaatgaatgattaaaata 225  Q
    |||||||||||||||| || | |||||||||| |||| || |||||| |  |||||||| || ||||||||||||||||||    
T  28963550 ggtttcacttgagtgacattagtttttggtgacattagtgcattttagatgagagagaatgaagaatgaatgattaaaata 28963630  T

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