View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_high_20 (Length: 418)
Name: NF21562_high_20
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 204 - 408
Target Start/End: Original strand, 5301966 - 5302170
Alignment:
| Q |
204 |
atttcgtctgataaaatttataattttaccttcaaactgcattttatattttaatttattgttcaattcttttcacattaggtaaaaccaaactttctat |
303 |
Q |
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| T |
5301966 |
atttcgtccgataaaatttataattttaccttcaaactgcattttatattttaatttattgttcaattattttcacattaagtaaaaccaaactttctgt |
5302065 |
T |
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| Q |
304 |
cctacatagatcattttttctctcaattcaattttacaaaattaattatcgtcaggctgaaaccaaacaaacattagagtttaaatctcattgccatact |
403 |
Q |
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| T |
5302066 |
cctacatagatcattttttctctcaattcaattttacaaaattaattatcgtcacgctgaaaccaaacaaacattagagtttaaaactcattgccatact |
5302165 |
T |
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| Q |
404 |
ttcat |
408 |
Q |
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| T |
5302166 |
ttcat |
5302170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 5301637 - 5301703
Alignment:
| Q |
18 |
tcattcagatcaattccagccgccggtacccacatcaatctgtcatggctcgaccctcatccttaac |
84 |
Q |
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| T |
5301637 |
tcattcagatcaattccagccgccgctacccatatcaatctgtcatggctcgaccctcatccttaac |
5301703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 5301791 - 5301856
Alignment:
| Q |
86 |
acttgtttaatagtttgttttgtgttaattgttaaggctttgaggaatgtcttggacactttcttt |
151 |
Q |
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| T |
5301791 |
acttgtttattagtttgttttatgttaattgttaaggctttgaggaatgtcttggacactttcttt |
5301856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 30085485 - 30085434
Alignment:
| Q |
157 |
tcacattttggaaatggataccacataaagtagtgaaatccacatgaatttc |
208 |
Q |
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| T |
30085485 |
tcacatgttggaaatggatcccacataaagtggtgagatccacatgagtttc |
30085434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 4568932 - 4568892
Alignment:
| Q |
181 |
ataaagtagtgaaatccacatgaatttcgtctgataaaatt |
221 |
Q |
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| T |
4568932 |
ataaagtggtgaaatccaaatgaatttcgtcttataaaatt |
4568892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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