View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_high_21 (Length: 416)
Name: NF21562_high_21
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Original strand, 27066844 - 27067248
Alignment:
| Q |
7 |
aaattctctccgaggctgtagaaggtgaaattctggtcagtttcgtagacagtgaaatgtgaggggtcgaaaggacgttgttttgtgagttccgggaagc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066844 |
aaattctctccgaggctgtagaaggtgaaattctggtcagtttcgtagacagtgaaatgtgaggggtcgaaaggacgttgttttgtgagttccgggaagc |
27066943 |
T |
|
| Q |
107 |
agaagagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtgg |
206 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066944 |
agaagagatgggcggcggagcagaattccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtgg |
27067043 |
T |
|
| Q |
207 |
tgaggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttgg |
306 |
Q |
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| T |
27067044 |
tgaggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttgg |
27067143 |
T |
|
| Q |
307 |
ttcttctctttttcatgatttatagctaaaccaacctgcattattcataaacataactaattagaataataataaaagagacatcaactatgaagcacag |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
27067144 |
ttcttctctttttcatgatttatagctaaaccaacctgcattattcataaacataaacaattagaataataataaaagagacatcaactatgaagcacgg |
27067243 |
T |
|
| Q |
407 |
acact |
411 |
Q |
| |
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||||| |
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| T |
27067244 |
acact |
27067248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 112 - 348
Target Start/End: Original strand, 27080633 - 27080869
Alignment:
| Q |
112 |
agatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtgagg |
211 |
Q |
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|||||||| || |||||||||||||||| ||||||||||||||||||||| ||||||||||| | || | ||||| |||||||||||||||||||| | |
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| T |
27080633 |
agatgggcagccgagcagaactccggcaactttgtggagagtgtgttggctgccgcgtgtttcgcaaaagccgcggtctcggtggcgctgagtggtgatg |
27080732 |
T |
|
| Q |
212 |
ccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttggttctt |
311 |
Q |
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||||| ||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||| | |||||||||||||||||| || |
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| T |
27080733 |
ccttattgaggatgaatgttggttttggtaacttgtttttgatcactctgtcccaataacgaattgcaaaagctttcgcagtgaatgggttttggttttt |
27080832 |
T |
|
| Q |
312 |
ctctttttcatgatttatagctaaaccaacctgcatt |
348 |
Q |
| |
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||| | |||||| | |||||||||||||||||| |
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| T |
27080833 |
gtctcctgcatgatccactgctaaaccaacctgcatt |
27080869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 99 - 304
Target Start/End: Original strand, 27053747 - 27053952
Alignment:
| Q |
99 |
cgggaagcagaagagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcg |
198 |
Q |
| |
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|||||||||||||||||| ||||| |||||||| ||||||| ||||||||| | |||||||||||| ||||| ||| || | || || ||||||||| |
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| T |
27053747 |
cgggaagcagaagagatgtgcggcagagcagaattccggcaactttgtggataatgtgttggcggcagcgtgcttttcaaaagctgcagcatcggtggcg |
27053846 |
T |
|
| Q |
199 |
ctgagtggtgaggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatg |
298 |
Q |
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|| |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||| |||| || ||||||||||||| |
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| T |
27053847 |
ctaagtggtgacgccttggagaggatgaaggatggttttggcaagttgtttttgatcactctgtcccaataccgaattgcatacgcctttggagtgaatg |
27053946 |
T |
|
| Q |
299 |
ggtttt |
304 |
Q |
| |
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||||| |
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|
| T |
27053947 |
agtttt |
27053952 |
T |
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