View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21562_high_24 (Length: 377)

Name: NF21562_high_24
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21562_high_24
NF21562_high_24
[»] chr2 (1 HSPs)
chr2 (18-308)||(30287167-30287457)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 30287457 - 30287167
Alignment:
Q  18 taattatgcctacgtatctgacaggtgagtaacttatctgtcaatatgaatcatactcaacaagtatcaataaagaaagggtaaatgtgaatcatcgaag 117  Q
    ||||||||||||| | |||||||||| ||| |||||||||| ||||||| ||||||||||||| |||| ||||| |||||||||||||||||||||||||    
T  30287457 taattatgcctacatctctgacaggttagtgacttatctgtgaatatgagtcatactcaacaaatatcgataaaaaaagggtaaatgtgaatcatcgaag 30287358  T
Q  118 aagtatcgaacctcaggctgctgcatgattgcatgctgaattcccccttgctcaagtggaagaatgttaaactcagnnnnnnngtggattgcatttcctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| |    
T  30287357 aagtatcgaacctcaggctgctgcatgattgcatgctgaattcccccttgctcaagtggaagaatgttaaactcagtttttttgtggattgcatttccat 30287258  T
Q  218 cggtaagagcctattttaatcaacaaattgataaactctaagaacacgaagaatacatggtaaagtgataatctatacatacatttgacta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287257 cggtaagagcctattttaatcaacaaattgataaactctaagaacacgaagaatacatggtaaagtgataatctatacatacatttgacta 30287167  T

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