View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21562_high_27 (Length: 339)
Name: NF21562_high_27
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 22307489 - 22307181
Alignment:
| Q |
14 |
gagatgaattcaaaatcaagtgtaattctacttcaacctaatacttaattgttaattaacttctttccacttttattgttaacttttttatgtttattca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22307489 |
gagatgaattcaaaatcaagtgtaattctacttcaacctaatacttaattgttaattaacttctttccacttttattgttaacttttttatgtttattca |
22307390 |
T |
|
| Q |
114 |
agacttgttatcttagtaactttcttgtaaagtttctgttagtagttacgtggtccaactaaaaagtaacattaacatacactaggcgttttgtattcct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22307389 |
agacttgttatcttagtaactttcttgtaaagtttctgttagtagttacgtggtccaactaaaaagtaacattaacatacactaggcgttttgtatttct |
22307290 |
T |
|
| Q |
214 |
gtctctaaagttaagagaatcttacaataatttaatttgcatgtatctctggtgtaaaatagtttacaccgacttccatttatattttaccatttaaata |
313 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22307289 |
gtctctaaagttaagagaatcttac-ataatttaatttgcatgtatatctggtgtaaaatagtttacaccgacttccatttatattttaccatttaaata |
22307191 |
T |
|
| Q |
314 |
tattcatatg |
323 |
Q |
| |
|
|||||||||| |
|
|
| T |
22307190 |
tattcatatg |
22307181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University