View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_high_28 (Length: 325)
Name: NF21562_high_28
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 67 - 278
Target Start/End: Complemental strand, 19166879 - 19166671
Alignment:
| Q |
67 |
gtatcaaaccccgcatcctccacacgttgctgtattgataccaacgtttcctcgtgctaaccgttgccaccaaacctgaaccggcccaatctctgtcttc |
166 |
Q |
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| T |
19166879 |
gtatcaaaccccgcatcctccacacgttg---tattgataccaacgtttcctcgtgctaaccgttgccaccaaacctgaaccggcccaatctctgtcttc |
19166783 |
T |
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| Q |
167 |
ttcagcaaactggtactcaatcacccccttattaatcaaattgccctctgaaccagtcagtacaaagttctcaggttgttccaaatcctcatccaattcg |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19166782 |
ttcagcaaactggtactcaatcacccccttattaatcaaattgccctctgaaccagtcagtacaaagttctcaggttgttccaaatcctcatccaaatcg |
19166683 |
T |
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| Q |
267 |
acggatttaata |
278 |
Q |
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|||||||||||| |
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| T |
19166682 |
acggatttaata |
19166671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 19166969 - 19166899
Alignment:
| Q |
17 |
atcagcagcatcattaaatacttgtaaaacatcaccattatcacggcaacgtatcaaaccccgcatcctcc |
87 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19166969 |
atcagcagcatcattaaaaacttgtaaaacatcaccattatcacggcaacgtatcaaaccccgcatcctcc |
19166899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 19166653 - 19166621
Alignment:
| Q |
275 |
aatagtaaggacgacgacttccttgttctttgg |
307 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
19166653 |
aatagtaaggacgacgacttccttgttctttgg |
19166621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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