View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21562_high_29 (Length: 319)

Name: NF21562_high_29
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21562_high_29
NF21562_high_29
[»] chr5 (2 HSPs)
chr5 (125-300)||(30752368-30752543)
chr5 (11-61)||(30752607-30752657)
[»] chr7 (3 HSPs)
chr7 (125-300)||(24129094-24129269)
chr7 (11-61)||(24128987-24129037)
chr7 (179-237)||(6841200-6841258)
[»] chr4 (2 HSPs)
chr4 (128-300)||(40219844-40220016)
chr4 (11-61)||(40219726-40219777)
[»] chr1 (2 HSPs)
chr1 (128-300)||(36299536-36299708)
chr1 (11-61)||(36299418-36299469)
[»] chr8 (1 HSPs)
chr8 (192-243)||(36713589-36713640)
[»] chr3 (1 HSPs)
chr3 (208-243)||(29314441-29314476)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 125 - 300
Target Start/End: Complemental strand, 30752543 - 30752368
Alignment:
Q  125 ctggatgcaaagcaaggttattgacacgagaatatgaacttttgcgagatagacaatttatttgaaaaatttggcctggcctcttgtgaaatttggggaa 224  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30752543 ctggatgcaaagcaaggttattggcacgagaatatgaacttttgcgagatagacaatttatttgaaaaatttggcctggcctcttgtgaaatttggggaa 30752444  T
Q  225 agatttattttttggttgacatgtagttgaaggttggttccctggttgttgtggttatgtgaaggtgatgccggtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30752443 agatttattttttggttgacatgtagttgaaggttggttccctggttgttgtggttatgtgaaggtgatgccggtt 30752368  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 30752657 - 30752607
Alignment:
Q  11 cagagagaaagggaatacaaccatttaaaataaataaataaaatacttgag 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30752657 cagagagaaagggaatacaaccatttaaaataaataaataaaatacttgag 30752607  T

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Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 125 - 300
Target Start/End: Original strand, 24129094 - 24129269
Alignment:
Q  125 ctggatgcaaagcaaggttattgacacgagaatatgaacttttgcgagatagacaatttatttgaaaaatttggcctggcctcttgtgaaatttggggaa 224  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24129094 ctggatgcaaagcaaggttattggcacgagaatatgaacttttgcgagatagacaatttatttgaaaaatttggcctggcctcttgtgaaatttggggaa 24129193  T
Q  225 agatttattttttggttgacatgtagttgaaggttggttccctggttgttgtggttatgtgaaggtgatgccggtt 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24129194 agatttattttttggttgacatgtagttgaaggttagttccctggttgttgtggttatgtgaaggtgatgccggtt 24129269  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 24128987 - 24129037
Alignment:
Q  11 cagagagaaagggaatacaaccatttaaaataaataaataaaatacttgag 61  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24128987 cagagagatagggaatacaaccatttaaaataaataaataaaatacttgag 24129037  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 6841200 - 6841258
Alignment:
Q  179 aatttatttgaaaaatttggcctggcctcttgtgaaatttggggaaagatttatttttt 237  Q
    ||||||||  ||||||||| |||||||  |||||||||||||| |||||||||||||||    
T  6841200 aatttattgtaaaaatttgacctggccctttgtgaaatttgggaaaagatttatttttt 6841258  T

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Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 128 - 300
Target Start/End: Original strand, 40219844 - 40220016
Alignment:
Q  128 gatgcaaagcaaggttattgacacgagaatatgaacttttgcgagatagacaatttatttgaaaaatttggcctggcctcttgtgaaatttggggaaaga 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40219844 gatgcaaagcaaggttattggcacgagaatatgaacttttgcgagatagacaatttatttgaaaaatttggcctggcctcttgtgaaatttggggaaaga 40219943  T
Q  228 tttattttttggttgacatgtagttgaaggttggttccctggttgttgtggttatgtgaaggtgatgccggtt 300  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40219944 tttattttttggttgatatgtagttgaaggttggttccctggttgttgtggttatgtgaaggtgatgccggtt 40220016  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 40219726 - 40219777
Alignment:
Q  11 cagagagaaagggaatacaaccattt-aaaataaataaataaaatacttgag 61  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40219726 cagagagaaagggaatacaaccatttaaaaataaataaataaaatacttgag 40219777  T

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Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 128 - 300
Target Start/End: Original strand, 36299536 - 36299708
Alignment:
Q  128 gatgcaaagcaaggttattgacacgagaatatgaacttttgcgagatagacaatttatttgaaaaatttggcctggcctcttgtgaaatttggggaaaga 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36299536 gatgcaaagcaaggttattggcacgagaatatgaacttttgcgagatagacaatttatttgaaaaatttggcctggcctcttgtgaaatttggggaaaga 36299635  T
Q  228 tttattttttggttgacatgtagttgaaggttggttccctggttgttgtggttatgtgaaggtgatgccggtt 300  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36299636 tttattttttggttgaaatgtagttgaaggttggttccctggttgttgtggttatgtgaaggtgatgccggtt 36299708  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 36299418 - 36299469
Alignment:
Q  11 cagagagaaagggaatacaaccattt-aaaataaataaataaaatacttgag 61  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36299418 cagagagaaagggaatacaaccatttaaaaataaataaataaaatacttgag 36299469  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 36713589 - 36713640
Alignment:
Q  192 aatttggcctggcctcttgtgaaatttggggaaagatttattttttggttga 243  Q
    |||||||| |||||  | ||||||||||||||||||||| ||||||||||||    
T  36713589 aatttggcttggcccatagtgaaatttggggaaagatttgttttttggttga 36713640  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 29314441 - 29314476
Alignment:
Q  208 ttgtgaaatttggggaaagatttattttttggttga 243  Q
    ||||||||||||||||||||||| ||||||||||||    
T  29314441 ttgtgaaatttggggaaagatttgttttttggttga 29314476  T

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