View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_high_31 (Length: 302)
Name: NF21562_high_31
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 49865899 - 49866172
Alignment:
| Q |
18 |
catataaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaatttttctaatatcaaatttatccaatgt |
117 |
Q |
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| T |
49865899 |
catataaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaatttttctaatatcaaatttatccaatga |
49865998 |
T |
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| Q |
118 |
gtgaatagattgatgaatatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagctaattccttgtag |
217 |
Q |
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| T |
49865999 |
gtgaatagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagctaattccttgtag |
49866098 |
T |
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| Q |
218 |
agttttgagctatggatttgtttcgagagttcttcagctgttgctttgaatactgctttgatcaattccttcat |
291 |
Q |
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| T |
49866099 |
agttttgagttatggatttgtttcgagagttcttcagctgttgctttgaatactgctttgatcaattccttcat |
49866172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 49871834 - 49872103
Alignment:
| Q |
22 |
taaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaatttttctaatatcaaatttatccaatgtgtga |
121 |
Q |
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| T |
49871834 |
taaacatgtttgttgattggcaagtgtacctgagagccaaactttaagatcataagcaatctcatcaattttgttaagatcaaatttatccaatgagtga |
49871933 |
T |
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| Q |
122 |
atagattgatgaatatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagctaattccttgtagagtt |
221 |
Q |
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| T |
49871934 |
atagattgatgaacatcatcaactgcataaccaaggacttctttgcaaatatccatagcttgctttgtcatgtcattggtagccaattccttgtagagtg |
49872033 |
T |
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| Q |
222 |
ttgagctatggatttgtttcgagagttcttcagctgttgctttgaatactgctttgatcaattccttcat |
291 |
Q |
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| T |
49872034 |
ttgagttgtgtatttgtttcacgagttcttcagctgttgcattgaatgcttgtttgatcaattccttcat |
49872103 |
T |
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