View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_high_33 (Length: 298)
Name: NF21562_high_33
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 45 - 285
Target Start/End: Original strand, 14332646 - 14332883
Alignment:
| Q |
45 |
ttatagaaaacatgttgctttgtcacaactttcaattatacattaattgctacgagtatacgttgtttatattgcagggttctaaatccattaacatttt |
144 |
Q |
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| T |
14332646 |
ttatagaaaacatgttgctttgtcacaactttcaattatacattaattgctacgagtatacgttgtttatattgcagggttctaaatccattaacatttg |
14332745 |
T |
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| Q |
145 |
gtgattatccttatataataatgaaaaagaatgttggatcaaggcttccttccttcactgcaaaggaatcaaatctgatcaagagctcaattgacatttt |
244 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || |
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| T |
14332746 |
gtgattatccttat---ataatgaaaaagaatgttggatcaaggcttccttccttcacagcaaaggaatcaaatctgatcaagagctcaattgacttctt |
14332842 |
T |
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| Q |
245 |
aggaataaacttttacagcttaatatatgttaagaataatc |
285 |
Q |
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| T |
14332843 |
aggaataaacttttacagcttaatatatgttaagaacaatc |
14332883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 45 - 285
Target Start/End: Original strand, 9989625 - 9989862
Alignment:
| Q |
45 |
ttatagaaaacatgttgctttgtcacaactttcaattatacattaattgctacgagtatacgttgtttatattgcagggttctaaatccattaacatttt |
144 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
9989625 |
ttataaaaaacatgttgctttgtcacaactttcaattatacattaattgctacgggtatacattgtttatattgcagggttctaaatccataaacatttg |
9989724 |
T |
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| Q |
145 |
gtgattatccttatataataatgaaaaagaatgttggatcaaggcttccttccttcactgcaaaggaatcaaatctgatcaagagctcaattgacatttt |
244 |
Q |
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| T |
9989725 |
gtgattttccttat---ataatgaaaaagaatgttggatcaaggcttccttccttcacagcgaaggaatcaaatttaatcaagagctcaattgacatctt |
9989821 |
T |
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| Q |
245 |
aggaataaacttttacagcttaatatatgttaagaataatc |
285 |
Q |
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| T |
9989822 |
agaaataaacttttacagtttaacatatgttaagaacaatc |
9989862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 114 - 280
Target Start/End: Complemental strand, 25327432 - 25327269
Alignment:
| Q |
114 |
tattgcagggttctaaatccattaacattttgtgattatccttatataataatgaaaaagaatgttggatcaaggcttccttccttcactgcaaaggaat |
213 |
Q |
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| T |
25327432 |
tattgcagggttctaaatccattaacatttggtgattatcctgatataat---gaaaaagaatgctggatcaaggcttccttccttcacaataaaggaat |
25327336 |
T |
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| Q |
214 |
caaatctgatcaagagctcaattgacattttaggaataaacttttacagcttaatatatgttaagaa |
280 |
Q |
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| T |
25327335 |
caaatctgatcaagaactcaattgacttcttaggaataaacttttacaacttaatatatgttaagaa |
25327269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 25321772 - 25321657
Alignment:
| Q |
162 |
ataatgaaaaagaatgttggatcaaggcttccttccttcactgcaaaggaatcaaatctgatcaagagctcaattgacattttaggaataaacttttaca |
261 |
Q |
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||||||| |||||||| ||||||||| |||||||| ||||| ||||||||||| ||| || ||| ||||||| ||| | |||||||| |||||||||| |
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| T |
25321772 |
ataatgagaaagaatgctggatcaagacttccttctttcacaaaaaaggaatcaagtcttataaagggctcaatggacttcttaggaatcaacttttaca |
25321673 |
T |
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| Q |
262 |
gcttaatatatgttaa |
277 |
Q |
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||| | | |||||||| |
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| T |
25321672 |
gctcattttatgttaa |
25321657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 21725790 - 21725934
Alignment:
| Q |
139 |
cattttgtgattatccttatataataatgaaaaagaatgttggatcaaggcttccttccttcactgcaaaggaatcaaatctgatcaagagctcaattga |
238 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21725790 |
catttggtgattatccttatataa---tgaaaaagaatgttggatcaaggcttccttccttcacagcaaaggaatcaaatctgatcaagagctcaattga |
21725886 |
T |
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| Q |
239 |
cattttaggaataaac-ttttacagcttaatatatgttaagaataatc |
285 |
Q |
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| | |||||||||||| |||||||||||| ||||||||||||| |||| |
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| T |
21725887 |
cttcttaggaataaactttttacagcttagtatatgttaagaacaatc |
21725934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 21805515 - 21805659
Alignment:
| Q |
139 |
cattttgtgattatccttatataataatgaaaaagaatgttggatcaaggcttccttccttcactgcaaaggaatcaaatctgatcaagagctcaattga |
238 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21805515 |
catttggtgattatccttatataa---tgaaaaagaatgttggatcaaggcttccttccttcacagcaaaggaatcaaatctgatcaagagctcaattga |
21805611 |
T |
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| Q |
239 |
cattttaggaataaac-ttttacagcttaatatatgttaagaataatc |
285 |
Q |
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| | |||||||||||| |||||||||||| ||||||||||||| |||| |
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| T |
21805612 |
cttcttaggaataaactttttacagcttagtatatgttaagaacaatc |
21805659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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