View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_high_39 (Length: 262)
Name: NF21562_high_39
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_39 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 3498559 - 3498298
Alignment:
| Q |
1 |
ttttaatccagctaccgttatagtatgggcggttttgcctggacagggaaatggtctggaattttctcccaagacaagtattacaacttcagcacctctt |
100 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3498559 |
ttttagtccagctaccgttatagtatgggtggttttgcctggacagggaaatggtctggaattttctcccaagacaagtattacaacttcagcacctctt |
3498460 |
T |
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| Q |
101 |
agcccacccaactggattggttttgcccctttacctgcctttttgttcagttggcaagatcaatctataccacttcactgctcaacagtttcaaattttt |
200 |
Q |
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| T |
3498459 |
agcccacccaactggattggttttgcccctttacctgcctttttgttcagttggcaagatcaatctataccacttcactgctcaacagtttcaaattttt |
3498360 |
T |
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| Q |
201 |
cagcatatgtgagtactgaagctgcaccctctacccattgttgtggtgtagcaggggtagcc |
262 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3498359 |
cagcatatgtgagttctgaagctgcaccctctacccagtgttgtggtgtagcaggggtagcc |
3498298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 3510583 - 3510530
Alignment:
| Q |
166 |
tataccacttcactgctcaacagtttcaaatttttcagcatatgtgagtactga |
219 |
Q |
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| T |
3510583 |
tataccacttcactgctcgccagtttcaaaattttcagcatatgtgagtcctga |
3510530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 3510715 - 3510582
Alignment:
| Q |
3 |
ttaatccagctaccgttatagtatgggcggttttgcctggacagggaaatggtctggaattttctcccaagacaagtattacaacttcag---cacctct |
99 |
Q |
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| T |
3510715 |
ttaatccagctgccattattgtatgggaggttatgcctggtcgtggaaatagtctccaattttctcccaagaaaagtatcaataatggcgtgccacctct |
3510616 |
T |
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| Q |
100 |
tagcccacccaactggattggttttgccccttta |
133 |
Q |
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| T |
3510615 |
tagcgcacccaactggagtggttttgcaccttta |
3510582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 31951024 - 31950874
Alignment:
| Q |
1 |
ttttaatccagctaccgttatagtatgggcggttttgcctggacagggaaatggtctggaattttctcccaagacaagtattacaacttcagcacctctt |
100 |
Q |
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||||||||||||||||||||| ||||||| ||||| | |||||| |||| ||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
31951024 |
ttttaatccagctaccgttattgtatgggaggtttctcatggacatggaactggtctggaatttgctcccaagacaagtattacaacttcaacacctctt |
31950925 |
T |
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| Q |
101 |
agcccacccaactggattggttttgcccctttacctgcctttttgttcagt |
151 |
Q |
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| T |
31950924 |
agcccacccaactggagtggttttgctcctttagctgcctttttgttcagt |
31950874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 31951576 - 31951725
Alignment:
| Q |
1 |
ttttaatccagctaccgttatagtatgggcggttttgcctggacagggaaatggtctggaattttctcccaagacaagtattacaacttcagcacctctt |
100 |
Q |
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||||||||||||||| ||||| ||||| | || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951576 |
ttttaatccagctactgttattgtatgtgaggcttctcctggacatggaaatggtctggaattttctcccaagacaagtattacaacttcagcacctctt |
31951675 |
T |
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| Q |
101 |
agcccacccaactggattggttttgcccctttacctgcctttttgttcag |
150 |
Q |
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| T |
31951676 |
agcccacccaactagagtggttttgctcctttagctgccattttgttcag |
31951725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 31951721 - 31951784
Alignment:
| Q |
199 |
ttcagcatatgtgagtactgaagctgcaccctctacccattgttgtggtgtagcaggggtagcc |
262 |
Q |
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|||||||||||||||| |||||| ||| ||| ||||||| |||||||||||||||||||||||| |
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| T |
31951721 |
ttcagcatatgtgagttctgaagttgcgcccactacccagtgttgtggtgtagcaggggtagcc |
31951784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 31950879 - 31950816
Alignment:
| Q |
199 |
ttcagcatatgtgagtactgaagctgcaccctctacccattgttgtggtgtagcaggggtagcc |
262 |
Q |
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| T |
31950879 |
ttcagtatatgtgagttttgaagctgcactcactaccaagtgttgtggtgtagtaggggtagcc |
31950816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 35567868 - 35567823
Alignment:
| Q |
177 |
actgctcaacagtttcaaatttttcagcatatgtgagtactgaagc |
222 |
Q |
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| T |
35567868 |
actgctcaccagtttcaaatttttcggcatatgtgagtcctgaagc |
35567823 |
T |
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