View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_high_45 (Length: 250)
Name: NF21562_high_45
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 36901808 - 36901582
Alignment:
| Q |
13 |
cagaccaatcaagtgttaaggctccaagtcctaaaccattcattcctgaacctatttgttgagctgtgactgatttggagaatacccaacatatccatga |
112 |
Q |
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| T |
36901808 |
cagaccaatcaagtgttaaggctccaagtcctaaaccattcattcctgaacctatttgttgagctgtgactgatttggagaatacccaacatacccatga |
36901709 |
T |
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| Q |
113 |
tatgcttgtaagcgttgtgaataagtatcctgggactatataccatgtaaaactgcatactagtgctatgaagaaaaactttgcccttgaaaattgatgg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36901708 |
tatgcttgtaagcgttgtgaataagtatcctgggactatataccatgtaaaactgcatactagtgctatgaagaaaaactttgcccttgaaaattgatgg |
36901609 |
T |
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| Q |
213 |
ggattatcgtctttctcatgcaaagtt |
239 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36901608 |
ggattatcgtctttctcatgcaaagtt |
36901582 |
T |
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Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 2172622 - 2172809
Alignment:
| Q |
17 |
ccaatcaagtgttaaggctccaagtcctaaaccattcattcctgaacctatttgttgagctgtgactgatttggagaatacccaacatatccatgatatg |
116 |
Q |
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|||||||||||| | |||||||| ||| | ||| ||||| ||||| |||| || |||||||||||||| |||| |||||||||||| | |||||||||| |
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| T |
2172622 |
ccaatcaagtgtgatggctccaattccaagacctttcatgcctgagcctaactgctgagctgtgactgacttggtgaatacccaacagacccatgatatg |
2172721 |
T |
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| Q |
117 |
cttgtaagcgttgtgaataagtatcctgggactatataccatgtaaaactgcatactagtgctatgaagaaaaactttgcccttgaaa |
204 |
Q |
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||||| || |||||||| ||||||||||||| | |||||||| |||||||||||||||||| || |||||||||||||||||||||| |
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| T |
2172722 |
cttgtgagtgttgtgaacaagtatcctgggatcacataccatgaaaaactgcatactagtgcaataaagaaaaactttgcccttgaaa |
2172809 |
T |
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