View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_high_5 (Length: 570)
Name: NF21562_high_5
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 14 - 570
Target Start/End: Complemental strand, 8636963 - 8636412
Alignment:
| Q |
14 |
agacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattaacat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8636963 |
agacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattagcat |
8636864 |
T |
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| Q |
114 |
tttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattgattatttacccc |
213 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
8636863 |
tttgcaatttcaaggatcactttggattactattaatgtatgagattatgttgataca----gttctacaatttcagggaccaaattgattatttatcc- |
8636769 |
T |
|
| Q |
214 |
aaaaattaaaccaaacagacaattcatcaaacatgttcaaggtgcaaaagtaaaccaaaaaccaacctgctgagagacgtaaacagcaaaaaatgaaacc |
313 |
Q |
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| T |
8636768 |
aaaaattaaaccaaacagacaattcatcaaacatgttcaagttgctaaagtaaaccaaaaaccaacctgctgagagacgtaaacagcaaaaaatgaaacc |
8636669 |
T |
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| Q |
314 |
caccaccaatgttttccatattgttgactcatctgagtgaaacgccaatcttctctagcaccccattgccatttttcacgtctaaagtaattatgagtga |
413 |
Q |
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| T |
8636668 |
caccaccaaagttttccatattgttgactcatctgagtgaaacgccaatcttctctagcaccccattgccatttttcacgtctaaagtaattatgagtga |
8636569 |
T |
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| Q |
414 |
gtctaatactccaaacccaagtcaacaaaatcacaatcttagacctccacaaatcatattgagccaaagggtgtgttgcatagcaatgaacaagcatcac |
513 |
Q |
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| T |
8636568 |
gtctaatactccaaacccaagtcaacaaaatcacaatcttagacctccacaaatcatattgagccaaagggtgtgttgcatagtaatgaacaagcatcac |
8636469 |
T |
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| Q |
514 |
aggaatcactgtccaatatggatcaatcaactgcatcatcactaacaataaaaatgt |
570 |
Q |
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| T |
8636468 |
aggaatcactgtccaatatggatcaatcaactgcatcatcactaacaataaaaatgt |
8636412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 302 - 549
Target Start/End: Original strand, 48617482 - 48617729
Alignment:
| Q |
302 |
aaaaatgaaacccaccaccaatgttttccatattgttgactcatctgagtgaaacgccaatcttctctagcaccccattgccatttttcacgtctaaagt |
401 |
Q |
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| T |
48617482 |
aaaaaggaagcccaccaccaatgttttccatattgttgaatcatatcagtgaaacgccaatcttcccttgcaccccattgccacttctctcgtctgaagt |
48617581 |
T |
|
| Q |
402 |
aattatgagtgagtctaatactccaaacccaagtcaacaaaatcacaatcttagacctccacaaatcatattgagccaaagggtgtgttgcatagcaatg |
501 |
Q |
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| || || |||||||||||||||| ||||||||||||| ||||| ||| | |||||||| |||||||| |||||||||||||| | |||||| |||| |
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| T |
48617582 |
agttgtggatgagtctaatactccacacccaagtcaacaggatcactatccttgacctccagaaatcatagtgagccaaagggtgggctgcataataatg |
48617681 |
T |
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| Q |
502 |
aacaagcatcacaggaatcactgtccaatatggatcaatcaactgcat |
549 |
Q |
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| T |
48617682 |
gacaagcatcacaggtatcactgtccaataagggtcaatcatctgcat |
48617729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 3115005 - 3114967
Alignment:
| Q |
179 |
ctacaatttcagggaccaaattgattatttaccccaaaa |
217 |
Q |
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| T |
3115005 |
ctacaatttcagggaccaaattgagtatttaccccaaaa |
3114967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 7145580 - 7145682
Alignment:
| Q |
104 |
tgattaacattttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattgat |
203 |
Q |
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||||||| ||||| ||||| | |||||| ||||||||||| |||| || ||||||| ||||| ||| || ||||||||| |||||||||||||| |
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| T |
7145580 |
tgattaatattttacaattatagggatcattttggaatattgataatctaagagattaagttgacaca----gtcctacaattttagggaccaaattgag |
7145675 |
T |
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| Q |
204 |
tatttac |
210 |
Q |
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||||||| |
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| T |
7145676 |
tatttac |
7145682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 7424293 - 7424202
Alignment:
| Q |
106 |
attaacattttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattg |
201 |
Q |
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| T |
7424293 |
attaacattttgcaatttcagggatcattttgaaatattgttaatgtcagagactaggttg----atacagtcctacaattttagggatcaaattg |
7424202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 9078337 - 9078278
Alignment:
| Q |
84 |
taccaacaaaggaacggatttgattaacattttgcaatttcaaggatcactttggaatat |
143 |
Q |
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|||||| | ||| ||| |||||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
9078337 |
taccaatagagggacgaatttgattaaaattttgcaatttcgaggatcattttggaatat |
9078278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 21496460 - 21496420
Alignment:
| Q |
104 |
tgattaacattttgcaatttcaaggatcactttggaatatt |
144 |
Q |
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| T |
21496460 |
tgattaacattttgcaatttcagggatcattttgaaatatt |
21496420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 44139328 - 44139288
Alignment:
| Q |
101 |
atttgattaacattttgcaatttcaaggatcactttggaat |
141 |
Q |
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| T |
44139328 |
atttgattaacattttgcaatttcaagtatcattgtggaat |
44139288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 54069319 - 54069267
Alignment:
| Q |
101 |
atttgattaacattttgcaatttcaaggatcactttggaatattattaatgta |
153 |
Q |
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| T |
54069319 |
atttgattaatattttgcaatttcaaggaaaattttggaatattcataatgta |
54069267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 21873581 - 21873693
Alignment:
| Q |
15 |
gacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattaacatt |
114 |
Q |
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||||||||||||||| |||| | |||| | || |||||||| ||||||||| | |||||| || | |||||| | ||||||| ||||||||| ||| |
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| T |
21873581 |
gacattattcacttagtttccaattcatccctgatattaccaatttaatgtcattctagtccctacaaataccaatagaggaacgagtttgattaaaatt |
21873680 |
T |
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| Q |
115 |
ttgcaatttcaag |
127 |
Q |
| |
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| T |
21873681 |
ttgcaatttcaag |
21873693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 32702746 - 32702696
Alignment:
| Q |
17 |
cattattcacttattttcacttgcatctccgacattaccaacttaatgtca |
67 |
Q |
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| T |
32702746 |
cattattctcttagtttcaaatgcatctccgacattaccaacttattgtca |
32702696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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