View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_high_52 (Length: 236)
Name: NF21562_high_52
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_52 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 19167207 - 19166972
Alignment:
| Q |
1 |
tgttcaacacctccaaagaatacgtagaaataagaattcgtgcaaaatcaattctacctctttccaaagtacactcatcctcccgcacaaatcttccaca |
100 |
Q |
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| T |
19167207 |
tgttcaacacctccaaagaatacgtagaaataagaattcgtgcaaaatcaattctacctctttccaaagtacactcatcctcccgcacaaaccttccaca |
19167108 |
T |
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| Q |
101 |
cttagaaacacatagcttgaaaaaatttatgttccaagcatgtaccggcgtaccatagattcgtacccacgcaccacgttcataccaaacttctttcgac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19167107 |
cttagaaacacatagcttgaaaaaatttatgttccaagcatgtaccggcgtaccatagattcgtacccaagcaccacgttcataccaaacttctttcgac |
19167008 |
T |
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| Q |
201 |
gtccatttatgcacatcggtaagaaacaatccaaaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
19167007 |
gtccatttatgcacatcggtaagaaacaatccaaaa |
19166972 |
T |
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