View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_high_53 (Length: 231)
Name: NF21562_high_53
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 21186826 - 21187040
Alignment:
| Q |
1 |
ttcaatctctgattcaaatactattcgaaatgcatagccgaactaacaacattaaaaccataatcaaataaaaattatcaacacacatcaccaatttcag |
100 |
Q |
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| T |
21186826 |
ttcaatgtctgattcaaatactattcgaaatacatagcctaactaacaacattaaaaccataatcaaataaaaattatcaacacacatcaccaatttcag |
21186925 |
T |
|
| Q |
101 |
cttaaaaataacaaaatctatacatgcattaaaagtatctacacacgcattacaagaacagtgtgaagttgatttgatttgaaggattcaattgattacc |
200 |
Q |
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| T |
21186926 |
cttaaaaataacaaaatcaatacatgcattaaaagtatctacacacgcattacaagaacagtgtgaagttgattagatttgaaggattcaattgattacc |
21187025 |
T |
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| Q |
201 |
ttaaacgcattcctg |
215 |
Q |
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| T |
21187026 |
ttaaacgcattcctg |
21187040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 8335148 - 8335090
Alignment:
| Q |
41 |
aactaacaacattaaaaccataatcaaataaaaattatcaacacacatcaccaatttca |
99 |
Q |
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| T |
8335148 |
aactaaccgcattaaaaccataaacaaataaaaattatcatcaaacatcaccaatttca |
8335090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 8334977 - 8334915
Alignment:
| Q |
139 |
ctacacacgcattacaagaacagtgtgaagttgatttgatttgaaggattcaattgattacct |
201 |
Q |
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||||||| | ||| || ||||||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
8334977 |
ctacacatggattgcacgaacagtgtgaagttgattcgattcaaaggattcaatttattacct |
8334915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 15086104 - 15086033
Alignment:
| Q |
145 |
acgcattacaagaacagtgtgaagttgatttgatttgaaggattcaattgattaccttaaacgcattcctga |
216 |
Q |
| |
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||||||| ||||||||||| ||| |||| |||| |||||||||||||||||||| |||||| ||||||| |
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| T |
15086104 |
acgcattgcaagaacagtgcaaagctgatccgattgaaaggattcaattgattacctcaaacgcgttcctga |
15086033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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