View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_high_9 (Length: 554)
Name: NF21562_high_9
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 59 - 536
Target Start/End: Original strand, 39087687 - 39088145
Alignment:
| Q |
59 |
ccaataatatttgtttgctgtgatgtggatttttactgttttaacaaaattggaaaagaaaagatacttgcaaatnnnnnnngtgcatacggcaggtaca |
158 |
Q |
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| T |
39087687 |
ccaataatatttgtttgctgtgatgtggatttttactgttttaacaaaattggaaaagaaaagatacttgcaaataaaaaa-gtgcatacggcaggtaca |
39087785 |
T |
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| Q |
159 |
ttccatcgatcggttgttaattttttgttaatcaccaacttaattttactgatatctcaacagcaaagtaagttgcttcattttgttactaaaaaagaaa |
258 |
Q |
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| T |
39087786 |
ttccatcgatcggttgttaattttttgttaatcaccaacttaattttactgatatctcaacagcaaagtaagttgcttcattttgttactaaaaaagaaa |
39087885 |
T |
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| Q |
259 |
ttatataatgtaaaatcaaatcatcaaaaagggtccactaatagctaactc----tatccattattacaacttaacaatatcgaacagtggctttagaaa |
354 |
Q |
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| T |
39087886 |
ttatataatgtaaaatcaaatcaccaaaaagggtccactaatagctaactctatatatccattattacaacttaacaacatcgaacagtggctttagaaa |
39087985 |
T |
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| Q |
355 |
catcatgccacacctatataaattgttccatccattccataacttgtcaacccaccaaaaccaaaacctatacattcattttcttgtctttccaaaatgg |
454 |
Q |
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| T |
39087986 |
catcatgccacacctatataaattgttccatccattccataacttg----------------------tatacattcattttcttgtctttccaaaatgg |
39088063 |
T |
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| Q |
455 |
attcgatcctcatcaccattgcatttctccttctcttaatgagtagtgaagcacgtgacccttttgcatgtgacccaaaaaa |
536 |
Q |
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| T |
39088064 |
attcgatcctcatcaccattgtatttctccttctcttaatgagtagtgaagcacgtgacccttttgcatgtgacccaaaaaa |
39088145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 39087622 - 39087661
Alignment:
| Q |
3 |
gatgaagtgttggttcaaagtaaaaatctaatatgatagaa |
43 |
Q |
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| T |
39087622 |
gatgaagtgttg-ttcaaagtaaaaatctaatatgatagaa |
39087661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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