View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_1 (Length: 911)
Name: NF21562_low_1
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 574; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 4 - 699
Target Start/End: Complemental strand, 12571564 - 12570863
Alignment:
| Q |
4 |
atgtccaagaatatcatcaatcaaactatggaatatagctgcctcaatctccataaccaactcatcttgctcctcaacaaacctactccatccacctctc |
103 |
Q |
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| T |
12571564 |
atgtccaa-aatatcatcaatcaaactttgtaatatagctgcctcaatctccataaccaactcatcttgctcctcatcaaacctactccatccacctctc |
12571466 |
T |
|
| Q |
104 |
ctatccatctccttgatataagcatctttattaacatgcacaatatcataagctttttcaaatgactcatttatccaatcctcagcaattttcattatct |
203 |
Q |
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| T |
12571465 |
ctatccatctccttgatataagcatctttattaacatgcacaatatcataagctttttcaaatgactcatttatccaatcctcagcaattttcattatct |
12571366 |
T |
|
| Q |
204 |
ccaactcaagcccctcattattcctcttttggtttctattaccacttagttcttccttgaaaaattccagcagaactatatctaaattgtcgtcgcaact |
303 |
Q |
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| T |
12571365 |
ccaactcaagcccctcattattcctcttttggtttctattaccacttagttcttccttgaaaaattccagcagaactatatctaaattgtcgtcgcaatt |
12571266 |
T |
|
| Q |
304 |
ttgcaccgatgaacttgttgctttgacaatatgtagtaattgctttgccctttcctcaatccaatcttgttcttcagttttttggtcctcctcttcctta |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
12571265 |
ttgcaccgatgaacttgttgctttgacaatatgtagtaattgctttgccctttcctcaatccaatcttgttcttcggttttttggtccttctcttcctta |
12571166 |
T |
|
| Q |
404 |
tcgtcagctttatattcttcgccatagtatgaattctcatccaatgagagacattcatctaaggttaccaggtcaaattttgcatgactctcaaatttat |
503 |
Q |
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| T |
12571165 |
tcgtcgtctttatattcttcgccatagtatgaattctcatccaatgagagacattcatctaaggttaccaggtcaaattttgcatggctctcaaatttat |
12571066 |
T |
|
| Q |
504 |
cagaagtttgtctgaat---ttttgttttctccctgttccaaaaattaaacattgttagtattactctaataaaataatac---aattatgctatgcttc |
597 |
Q |
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| T |
12571065 |
cagaagtttgtctgaattttttttgttttctccctgttccaaaaatgaaacattgttagtattactctaataaaataatacaataattatgctatgcttc |
12570966 |
T |
|
| Q |
598 |
taaaattaaaaact-aaggnnnnnnnatatgcatagcataagataatccaactcaaattgttaaatgtcttgattggtctaagagttaaatagttgaata |
696 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||| || |
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| T |
12570965 |
taaaattaaaaactaaatatttttcgatatgcatagcataagataatccaactgaaattgttaaatgtcatgattggtctaagaattaaatagttgatta |
12570866 |
T |
|
| Q |
697 |
ttg |
699 |
Q |
| |
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| T |
12570865 |
ttg |
12570863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 707 - 893
Target Start/End: Complemental strand, 12570435 - 12570239
Alignment:
| Q |
707 |
ttttcgaacattgccaattttgaaaaaatcactatttgtgtttggttggtctaataatacataacacattggttaattgaaa------------cttact |
794 |
Q |
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|||| |||||||| ||||||| | ||||| |||| |||| || ||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
12570435 |
ttttagaacattgtcaatttt-acaaaattactaattgtatt-ggttggtctaataatgcataacacattggttaattgaaaggaaagaagaaacttact |
12570338 |
T |
|
| Q |
795 |
ttcaatattggcaaggttttggtcaaagattgaaaattcattttctgcaacccgaagaactgaaactggactgtgttgttcatcttggcaaggcaaatc |
893 |
Q |
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| T |
12570337 |
ttcaatattggcaaggctttggtcaaagattgaaaattcattttctgcaacccgaagaactgaaactggactgtgttgttcatcttggcaagtcaaatc |
12570239 |
T |
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