View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21562_low_10 (Length: 523)

Name: NF21562_low_10
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21562_low_10
NF21562_low_10
[»] chr5 (24 HSPs)
chr5 (20-512)||(31113121-31113614)
chr5 (141-309)||(10591918-10592086)
chr5 (146-259)||(5123485-5123598)
chr5 (171-286)||(18909313-18909428)
chr5 (145-290)||(22187984-22188127)
chr5 (147-317)||(30784974-30785144)
chr5 (164-309)||(2798320-2798464)
chr5 (164-309)||(2804487-2804631)
chr5 (148-310)||(12682625-12682787)
chr5 (142-263)||(35774622-35774743)
chr5 (163-234)||(36212962-36213033)
chr5 (149-309)||(10795308-10795466)
chr5 (161-265)||(18244619-18244723)
chr5 (145-223)||(25983742-25983820)
chr5 (211-309)||(28023495-28023593)
chr5 (161-243)||(41446654-41446736)
chr5 (146-233)||(29553606-29553693)
chr5 (141-291)||(35914431-35914581)
chr5 (161-232)||(41433940-41434011)
chr5 (170-309)||(3525864-3526003)
chr5 (158-233)||(32313105-32313180)
chr5 (141-182)||(373746-373787)
chr5 (159-196)||(2760310-2760347)
chr5 (141-273)||(38951789-38951921)
[»] chr4 (32 HSPs)
chr4 (145-309)||(31307052-31307216)
chr4 (141-309)||(38766080-38766248)
chr4 (149-310)||(35334088-35334249)
chr4 (145-309)||(14854596-14854760)
chr4 (141-292)||(46016154-46016308)
chr4 (141-264)||(9012306-9012429)
chr4 (146-310)||(45994512-45994676)
chr4 (141-263)||(51626288-51626410)
chr4 (154-264)||(13948587-13948697)
chr4 (147-309)||(35972334-35972496)
chr4 (149-272)||(46250545-46250668)
chr4 (141-309)||(7096087-7096254)
chr4 (149-305)||(17135092-17135247)
chr4 (148-232)||(33529325-33529409)
chr4 (145-306)||(32005132-32005298)
chr4 (145-305)||(38844154-38844314)
chr4 (151-310)||(56447115-56447273)
chr4 (161-309)||(13686592-13686741)
chr4 (170-250)||(3649057-3649137)
chr4 (217-288)||(11140469-11140540)
chr4 (168-291)||(51853707-51853828)
chr4 (145-270)||(14042859-14042984)
chr4 (147-202)||(15133473-15133528)
chr4 (147-229)||(18841556-18841639)
chr4 (170-309)||(22189399-22189538)
chr4 (170-273)||(47023429-47023532)
chr4 (161-233)||(3976641-3976713)
chr4 (141-177)||(37241358-37241394)
chr4 (141-232)||(16994158-16994251)
chr4 (168-250)||(28408537-28408619)
chr4 (219-292)||(56425897-56425970)
chr4 (159-239)||(22017525-22017605)
[»] chr7 (34 HSPs)
chr7 (145-309)||(29059796-29059960)
chr7 (145-306)||(31492097-31492258)
chr7 (141-309)||(8839262-8839431)
chr7 (158-310)||(19477249-19477400)
chr7 (147-310)||(21747028-21747190)
chr7 (145-309)||(28537381-28537541)
chr7 (175-309)||(13254117-13254251)
chr7 (148-309)||(20207489-20207649)
chr7 (145-310)||(35707837-35708001)
chr7 (141-310)||(42741791-42741963)
chr7 (141-309)||(46373664-46373834)
chr7 (145-254)||(11486730-11486839)
chr7 (141-229)||(37339715-37339803)
chr7 (145-264)||(24172243-24172364)
chr7 (171-310)||(7265325-7265464)
chr7 (173-243)||(14545000-14545070)
chr7 (141-291)||(24579434-24579584)
chr7 (147-224)||(31776494-31776571)
chr7 (189-309)||(40099302-40099422)
chr7 (168-310)||(27484058-27484200)
chr7 (205-310)||(7190405-7190510)
chr7 (211-309)||(2657888-2657986)
chr7 (146-196)||(28665194-28665244)
chr7 (150-291)||(28828756-28828897)
chr7 (159-224)||(29428792-29428857)
chr7 (141-280)||(23933633-23933772)
chr7 (171-309)||(4059705-4059842)
chr7 (147-193)||(45778971-45779017)
chr7 (148-192)||(36821069-36821113)
chr7 (157-204)||(1424669-1424716)
chr7 (141-232)||(25241107-25241198)
chr7 (224-309)||(2371139-2371224)
chr7 (145-178)||(14552482-14552515)
chr7 (149-230)||(32469986-32470069)
[»] chr8 (22 HSPs)
chr8 (145-317)||(2743916-2744088)
chr8 (141-309)||(4125006-4125174)
chr8 (147-309)||(19715713-19715876)
chr8 (145-309)||(13468731-13468895)
chr8 (151-309)||(12958077-12958235)
chr8 (145-309)||(30935995-30936159)
chr8 (145-249)||(7839239-7839343)
chr8 (170-291)||(15682938-15683059)
chr8 (149-310)||(30055991-30056152)
chr8 (161-309)||(36994502-36994650)
chr8 (146-272)||(24988522-24988653)
chr8 (188-309)||(35206991-35207112)
chr8 (166-292)||(16701386-16701512)
chr8 (147-196)||(39086856-39086905)
chr8 (213-308)||(27121804-27121899)
chr8 (141-207)||(8521791-8521856)
chr8 (213-310)||(4321558-4321655)
chr8 (166-309)||(23981478-23981623)
chr8 (182-233)||(8034152-8034203)
chr8 (141-203)||(40320193-40320255)
chr8 (198-310)||(32422811-32422924)
chr8 (171-291)||(44638992-44639112)
[»] scaffold0182 (1 HSPs)
scaffold0182 (145-292)||(26339-26486)
[»] chr2 (33 HSPs)
chr2 (141-309)||(5394388-5394555)
chr2 (145-309)||(31579215-31579379)
chr2 (145-309)||(42745102-42745266)
chr2 (149-305)||(18105353-18105508)
chr2 (149-310)||(9438126-9438287)
chr2 (202-309)||(44732616-44732723)
chr2 (147-309)||(993745-993906)
chr2 (187-309)||(12133258-12133380)
chr2 (175-317)||(33756960-33757102)
chr2 (145-309)||(17981489-17981652)
chr2 (141-264)||(37179983-37180101)
chr2 (141-223)||(25423821-25423903)
chr2 (164-309)||(44752199-44752344)
chr2 (217-309)||(37568785-37568877)
chr2 (141-291)||(38463964-38464114)
chr2 (198-291)||(7157507-7157600)
chr2 (151-246)||(7020352-7020446)
chr2 (159-250)||(38743788-38743879)
chr2 (143-264)||(38372978-38373097)
chr2 (141-209)||(14551565-14551633)
chr2 (145-205)||(37092181-37092241)
chr2 (160-262)||(39401070-39401172)
chr2 (141-190)||(1682132-1682181)
chr2 (171-259)||(14121894-14121982)
chr2 (141-206)||(17655755-17655822)
chr2 (141-244)||(24412909-24413011)
chr2 (220-309)||(34483453-34483541)
chr2 (149-206)||(39562259-39562316)
chr2 (141-204)||(32642964-32643028)
chr2 (223-310)||(42905689-42905775)
chr2 (235-309)||(28365940-28366014)
chr2 (217-309)||(17627550-17627642)
chr2 (199-259)||(39314487-39314547)
[»] chr1 (39 HSPs)
chr1 (146-310)||(22022110-22022274)
chr1 (141-309)||(16756073-16756241)
chr1 (141-289)||(18428124-18428271)
chr1 (147-267)||(7242795-7242915)
chr1 (145-309)||(28724664-28724827)
chr1 (146-279)||(9780976-9781109)
chr1 (145-262)||(36806649-36806766)
chr1 (148-309)||(45806227-45806388)
chr1 (147-240)||(42297430-42297523)
chr1 (141-264)||(12035585-12035709)
chr1 (141-229)||(15642526-15642614)
chr1 (147-310)||(32534073-32534235)
chr1 (161-309)||(10841008-10841157)
chr1 (169-309)||(24801372-24801512)
chr1 (141-286)||(46864105-46864250)
chr1 (150-273)||(39547355-39547478)
chr1 (153-310)||(31733685-31733842)
chr1 (141-229)||(10367575-10367663)
chr1 (141-309)||(10750589-10750756)
chr1 (162-310)||(25655267-25655415)
chr1 (220-310)||(28506279-28506369)
chr1 (147-229)||(44913180-44913262)
chr1 (214-310)||(36982345-36982441)
chr1 (214-309)||(40019232-40019327)
chr1 (220-310)||(29124735-29124825)
chr1 (173-234)||(32883561-32883622)
chr1 (222-310)||(17600561-17600649)
chr1 (141-204)||(49071673-49071736)
chr1 (214-288)||(32883625-32883699)
chr1 (182-286)||(36522259-36522363)
chr1 (235-309)||(21774595-21774668)
chr1 (220-317)||(16552484-16552581)
chr1 (141-225)||(2044472-2044556)
chr1 (215-311)||(35540036-35540132)
chr1 (168-235)||(28286442-28286509)
chr1 (227-317)||(17888729-17888819)
chr1 (159-232)||(9639557-9639630)
chr1 (189-310)||(13546416-13546537)
chr1 (161-233)||(33721007-33721079)
[»] chr3 (26 HSPs)
chr3 (149-309)||(30995955-30996115)
chr3 (145-309)||(25224690-25224854)
chr3 (141-309)||(48204293-48204461)
chr3 (149-309)||(27763714-27763872)
chr3 (146-259)||(20861289-20861402)
chr3 (141-310)||(40294602-40294771)
chr3 (141-262)||(1642644-1642765)
chr3 (141-309)||(38331119-38331287)
chr3 (142-292)||(48210943-48211093)
chr3 (141-263)||(55123134-55123256)
chr3 (163-309)||(14352545-14352694)
chr3 (198-309)||(38088626-38088737)
chr3 (145-209)||(8757435-8757499)
chr3 (145-263)||(22288272-22288390)
chr3 (141-310)||(15283065-15283230)
chr3 (141-249)||(39950263-39950371)
chr3 (141-264)||(11767146-11767269)
chr3 (145-232)||(25739155-25739243)
chr3 (145-185)||(40318435-40318475)
chr3 (142-249)||(43621294-43621402)
chr3 (149-209)||(44941255-44941314)
chr3 (213-309)||(42514595-42514693)
chr3 (219-292)||(22755652-22755725)
chr3 (169-273)||(15446019-15446127)
chr3 (170-258)||(21223465-21223553)
chr3 (220-292)||(54877841-54877913)
[»] chr6 (19 HSPs)
chr6 (145-309)||(12411139-12411303)
chr6 (147-310)||(21910195-21910357)
chr6 (145-269)||(12836883-12837007)
chr6 (141-309)||(31412114-31412281)
chr6 (147-310)||(31107481-31107644)
chr6 (146-292)||(28099251-28099397)
chr6 (173-309)||(423646-423782)
chr6 (213-317)||(25084017-25084121)
chr6 (149-223)||(9536844-9536918)
chr6 (141-310)||(278382-278550)
chr6 (162-310)||(21028982-21029134)
chr6 (148-249)||(17177189-17177290)
chr6 (180-302)||(5944840-5944962)
chr6 (141-232)||(1534320-1534409)
chr6 (251-310)||(8507135-8507194)
chr6 (146-305)||(15614560-15614719)
chr6 (215-286)||(29185307-29185378)
chr6 (162-243)||(21028845-21028924)
chr6 (161-259)||(28933179-28933277)
[»] scaffold0009 (2 HSPs)
scaffold0009 (146-230)||(27212-27296)
scaffold0009 (225-312)||(32330-32417)
[»] scaffold0013 (1 HSPs)
scaffold0013 (141-204)||(29134-29197)
[»] scaffold0020 (1 HSPs)
scaffold0020 (235-309)||(167846-167918)
[»] scaffold0071 (1 HSPs)
scaffold0071 (169-273)||(16065-16173)
[»] scaffold0189 (1 HSPs)
scaffold0189 (163-279)||(10973-11089)


Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Complemental strand, 31113614 - 31113121
Alignment:
Q  20 acctttaccgagtcgatcaccgaatcagttttcaaaactatggatgtgaataatgattttgttgctgtttggtagttttccggtagccttgtaaatactt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31113614 acctttaccgagtcgatcaccgaatcagttttcaaaactatggatgtgaataatgattttgttgctgtttggtagttttccggtagccttgtaaatactt 31113515  T
Q  120 tcagacnnnnnnnnnnnnnnnaaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctcc 219  Q
    ||||||               |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31113514 tcagactttttttttttgtgtaaatcgggtatccttcgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctcc 31113415  T
Q  220 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaatgttcttta 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  31113414 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctaaaaaagacccgtttcatctcatctaaatgttcttta 31113315  T
Q  320 gtccacactttactttactttcctttcggggacatccaatnnnnnnnnnta-ctttcagacttttggctgtactaaggtgtttcttccatagcgcactct 418  Q
    ||| ||||||||||||||||||| ||||||||||||||||          | ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31113314 gtcaacactttactttactttcccttcggggacatccaataaaaaaaaaaatctttcagacttttggctgtactaaggtgtttcttccatagcacactct 31113215  T
Q  419 ctcttaggaagacatttttattgcgttaatatactagagagtttcttattggtattgctctctccaaggtttcttattcccgcacacaggttct 512  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  31113214 ctcttaggaagacatttttattgtggtaatatactagagagtttcttattggtattgctctctccaaggtttcttattcccacacgcaggttct 31113121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 141 - 309
Target Start/End: Complemental strand, 10592086 - 10591918
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  ||||||||||| || |||||||||||||||||||||||||||    
T  10592086 aaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgctg 10591987  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||||||| ||||||||| || |||||  |||| |||||||||||| ||| ||||||||||||    
T  10591986 catgcccaaggctggattcgaacccaggaccttggttaatctagaagagacccgttccatctcatctaa 10591918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 5123485 - 5123598
Alignment:
Q  146 gggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgc 245  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  5123485 gggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatgc 5123584  T
Q  246 ccaaggctgaattc 259  Q
    ||||||||||||||    
T  5123585 ccaaggctgaattc 5123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 171 - 286
Target Start/End: Original strand, 18909313 - 18909428
Alignment:
Q  171 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 270  Q
    |||||||||||||||| |||||||||| |||||| |||| |   ||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||    
T  18909313 agactaatccctcgagcattgtgggattcaaatgagcggcaaattctccctaagagttttaacactgctgcatacccaaggctggattcgaacctaggac 18909412  T
Q  271 cttaattaagctagaa 286  Q
    ||| ||||||||||||    
T  18909413 cttgattaagctagaa 18909428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 145 - 290
Target Start/End: Original strand, 22187984 - 22188127
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| || ||||||  |||||||||||| ||| || |||    
T  22187984 cgggtatcctccgcgcgcaactgcggagactaatccctctagtattgtgggacccaaataggcggcagactctcc--aagagttttaacgctgttgtatg 22188081  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagaga 290  Q
    |||||||||| |||| |||| |  |||||  ||||| |||||||||    
T  22188082 cccaaggctggattcaaacccaataccttggttaagttagaagaga 22188127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 147 - 317
Target Start/End: Original strand, 30784974 - 30785144
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcc 246  Q
    |||||||||||||||||||||||||||||||||||| ||  |||||| || | ||||||  || ||  |||||||||||||||||||  ||||||||| |    
T  30784974 ggtatcctccgcgcgcaactgcggagactaatcccttgaacattgtgagacctaaatggatggcagattctccctaagagttttaacgttgctgcatgtc 30785073  T
Q  247 caaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaatgttctt 317  Q
    ||| |||| ||||||||| |  || || |||||||||||||||||  ||| ||||||||||||||| ||||    
T  30785074 caaagctggattcgaacccaagacattgattaagctagaagagactcgttccatctcatctaaatgctctt 30785144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 2798320 - 2798464
Alignment:
Q  164 actgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaac 263  Q
    ||||| |||| ||||| || ||| ||||| | | |||||||||||||| ||||||||||| ||||||||| ||||||||||| ||||| || ||||||||    
T  2798320 actgcagagattaatctctagagcattgtagaaaccaaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaac 2798419  T
Q  264 ctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    | ||||||||  ||||||||||||| ||| ||||||||||||||||    
T  2798420 ccagaaccttggttaagctagaagaaacc-gtttcatctcatctaa 2798464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 2804487 - 2804631
Alignment:
Q  164 actgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaac 263  Q
    ||||| |||| ||||| || ||| ||||| | | |||||||||||||| ||||||||||| ||||||||| ||||||||||| ||||| || ||||||||    
T  2804487 actgcagagattaatctctagagcattgtagaaaccaaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaac 2804586  T
Q  264 ctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    | | ||||||  ||||||||||||| ||| ||||||||||||||||    
T  2804587 ccaaaaccttggttaagctagaagaaacc-gtttcatctcatctaa 2804631  T

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Target: chr5; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 148 - 310
Target Start/End: Complemental strand, 12682787 - 12682625
Alignment:
Q  148 gtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccc 247  Q
    |||||||||||||||||||||| |||||||| |||||| ||| ||||||| ||| ||  ||  | | |||||| ||||||||||||  || ||||||| |    
T  12682787 gtatcctccgcgcgcaactgcgaagactaattcctcgaatatggtgggattcaattgaacgacaagttctcccgaagagttttaacgttgttgcatgctc 12682688  T
Q  248 aaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    ||||||| ||||||||  ||||| ||  ||||||||||||||||  |||||||||||| ||||    
T  12682687 aaggctggattcgaactcagaacattgcttaagctagaagagactcgtttcatctcatttaaa 12682625  T

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Target: chr5; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 142 - 263
Target Start/End: Complemental strand, 35774743 - 35774622
Alignment:
Q  142 aatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgc 241  Q
    ||||||||||| |||||| ||||||| ||||| |||| | |||||||||||| ||  |||||| |||| | |||||||||||| ||||||||| || |||    
T  35774743 aatcgggtatcttccgcgtgcaactgaggagattaattcatcgagtattgtgagactcaaatgtgcggcaagctctccctaagtgttttaacattgttgc 35774644  T
Q  242 atgcccaaggctgaattcgaac 263  Q
    ||| |||||||| |||||||||    
T  35774643 atgtccaaggctaaattcgaac 35774622  T

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Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 36213033 - 36212962
Alignment:
Q  163 aactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaaca 234  Q
    |||||||||||| ||||||||||| ||||||||| | |||||||||| |  |||||||||||||||||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggcaaactctccctaagagttttaaca 36212962  T

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Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 309
Target Start/End: Original strand, 10795308 - 10795466
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccca 248  Q
    |||||||| ||||||||| || | ||||||||||| | | |||||||| |||||||||||| |   ||||| | ||||||||||  ||||| |||||| |    
T  10795308 tatcctccacgcgcaactacgaacactaatccctcaaattttgtgggacccaaatgggcggcacattctcctttagagttttaatgctgcttcatgccta 10795407  T
Q  249 aggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||| ||| |||| ||| |||||  ||||||  ||||||| | || |||||||||||||    
T  10795408 aggctggatttgaacttaggaccttggttaagc--gaagagatccgtatcatctcatctaa 10795466  T

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Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 18244723 - 18244619
Alignment:
Q  161 gcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcg 260  Q
    ||||||||||||||||||| ||| |||||||||| | ||||||||| || |   |||||| |||||||||||  ||||||||||  |||| ||||||||     
T  18244723 gcaactgcggagactaatctctcaagtattgtggaacccaaatgggtggaaaaatctcccaaagagttttaatgctgctgcatgttcaagactgaattca 18244624  T
Q  261 aacct 265  Q
    |||||    
T  18244623 aacct 18244619  T

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Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 25983820 - 25983742
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaa 223  Q
    ||||||||||||| | ||||||||||||||||||| |||||  ||| |||||  ||||||||||| | |||||||||||    
T  25983820 cgggtatcctccgtgtgcaactgcggagactaatcactcgaacattatgggactcaaatgggcggcaagctctccctaa 25983742  T

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Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 28023495 - 28023593
Alignment:
Q  211 aggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||||||||||| |||||||||||| ||  ||||| ||||||| ||||||||  || || ||  ||||||||||||||| | ||| ||||||||||||    
T  28023495 aggctctccctaaaagttttaacactactatatgcctaaggctggattcgaactcaggacattggttaagctagaagagatccgttccatctcatctaa 28023593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 41446654 - 41446736
Alignment:
Q  161 gcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcat 243  Q
    ||||| ||||||||||||| ||||||| |||||||| ||||||| ||||||  |||||  |||||||||||||| | ||||||    
T  41446654 gcaacagcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctctgtaagagttttaacattactgcat 41446736  T

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Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 29553693 - 29553606
Alignment:
Q  146 gggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaac 233  Q
    ||||||||||| ||| ||||||| |||||||||| || ||| ||| ||||| |||||||| ||  |  ||||||||||||||||||||    
T  29553693 gggtatcctccacgcacaactgcagagactaatctcttgagcattctgggacccaaatggacgacaaactctccctaagagttttaac 29553606  T

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Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 291
Target Start/End: Complemental strand, 35914581 - 35914431
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaact-gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgct 239  Q
    |||||| |||||||||||| |||| | |  |||| ||||| ||||||  |||||||||  ||||||| || |  |||||||||||||| | |||  || |    
T  35914581 aaatcgagtatcctccgcgtgcaatttgtagagattaatcactcgaggcttgtgggatttaaatgggtggaaaactctccctaagagtgt-aacgttgtt 35914483  T
Q  240 gcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagac 291  Q
    |||||||||| | || ||||||| |||||||||| |||||| ||||||||||    
T  35914482 gcatgcccaatgttggattcgaatctagaaccttgattaagttagaagagac 35914431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 41433940 - 41434011
Alignment:
Q  161 gcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaa 232  Q
    ||||||||||||||||||| ||||||| |||||||| | ||||| ||||||  |||||  ||||||||||||    
T  41433940 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 41434011  T

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Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 309
Target Start/End: Original strand, 3525864 - 3526003
Alignment:
Q  170 gagactaatccctcgagtattgtggga-tccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctaga 268  Q
    ||||||||||||   ||| |||||||| || |||| ||||| |  |||||||||| |||||||||| || |||||| | |||  || |||||||| ||||    
T  3525864 gagactaatccccttagtcttgtgggaatctaaataggcggcaaactctccctaaaagttttaacaatgttgcatgtctaagagtggattcgaac-taga 3525962  T
Q  269 accttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    | |||  |||| ||||||||||| ||| |||||||||||||    
T  3525963 atcttggttaaactagaagagacatgtgtcatctcatctaa 3526003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 32313105 - 32313180
Alignment:
Q  158 cgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaac 233  Q
    ||||||||||  ||||||||||||||||||||||| |||   |||||||| | |  |||||| |||||||||||||    
T  32313105 cgcgcaactgtagagactaatccctcgagtattgtaggacttaaatgggcagcaaactctccttaagagttttaac 32313180  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 373746 - 373787
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccct 182  Q
    |||| |||||||||||| ||||||||||||||| ||||||||    
T  373746 aaattgggtatcctccgtgcgcaactgcggagattaatccct 373787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 2760347 - 2760310
Alignment:
Q  159 gcgcaactgcggagactaatccctcgagtattgtggga 196  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  2760347 gcgcaactgcagagactaatccctcgagtcttgtggga 2760310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 273
Target Start/End: Complemental strand, 38951921 - 38951789
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||||||||||||| ||| | ||||| | |  |||||| ||| || ||||||||| | |||| | ||||| ||||||||| ||| ||||||   || ||    
T  38951921 aaatcgggtatcctctgcgtgtaactgtgtatgctaatctctcaagcattgtgggacctaaattgacggtaagctctcccttagaattttaaggttgatg 38951822  T
Q  241 catgcccaaggctgaattcgaacctagaacctt 273  Q
    ||||||||| | |||||| ||||| || |||||    
T  38951821 catgcccaaagttgaatttgaaccaaggacctt 38951789  T

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Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 145 - 309
Target Start/End: Original strand, 31307052 - 31307216
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  31307052 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 31307151  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||| ||||||||| || |||||  ||||||||||||||||| ||| ||||||||||||    
T  31307152 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaa 31307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 141 - 309
Target Start/End: Complemental strand, 38766248 - 38766080
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||| || |||||||||||||||||||| ||||||    
T  38766248 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctgctg 38766149  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||||||| |||| |||| || |||||  ||||||||||||||||  ||| ||||||||||||    
T  38766148 catgcccaaggctggattcaaacccaggaccttggttaagctagaagagactcgttccatctcatctaa 38766080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 149 - 310
Target Start/End: Original strand, 35334088 - 35334249
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccca 248  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||  | ||||| |||||||||||||| ||||||||||||||    
T  35334088 tatccttcacgcgcaactgcggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaactctgctgcatgccca 35334187  T
Q  249 aggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    ||||||||| |||||| ||||||||  |||||||||||||||| |||| |||||||||||||    
T  35334188 aggctgaatacgaaccaagaaccttggttaagctagaagagacttgttccatctcatctaaa 35334249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 145 - 309
Target Start/End: Complemental strand, 14854760 - 14854596
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||| | |||||||||||||||||||||  |||||||||    
T  14854760 cgggtatcctccgcgcgcaactgcagagactaatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaacgatgctgcatg 14854661  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||| ||||||||| ||||||||  ||||||||||||||| | ||| ||||||||||||    
T  14854660 cccaaggctggattcgaacccagaaccttggttaagctagaagagaaccgttccatctcatctaa 14854596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 141 - 292
Target Start/End: Complemental strand, 46016308 - 46016154
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||||||||||||| ||||||||| ||||||||||| | ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  46016308 aaatcgggtatcctccacgcgcaactacggagactaattcttcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctg 46016209  T
Q  241 catgcccaaggctgaattcgaacctagaac---cttaattaagctagaagagacc 292  Q
    |||||||||||||| ||||||||| || ||   |||  |||||||||||||||||    
T  46016208 catgcccaaggctggattcgaacccaggacctacttggttaagctagaagagacc 46016154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 9012429 - 9012306
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| | ||||||||||||||||| ||||||||||    
T  9012429 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagtttgaacactgctg 9012330  T
Q  241 catgcccaaggctgaattcgaacc 264  Q
    |||||||||||||  |||||||||    
T  9012329 catgcccaaggctagattcgaacc 9012306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 146 - 310
Target Start/End: Complemental strand, 45994676 - 45994512
Alignment:
Q  146 gggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgc 245  Q
    |||||||||  ||| ||||||||||||||||||| |||||| |||||| || |||||||||||  |||||||||||||||||||||||  || |||||||    
T  45994676 gggtatccttggcgtgcaactgcggagactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttgttgcatgc 45994577  T
Q  246 ccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    ||||||||| ||||||| | || |||||  ||||||||||||||||||||| |||||||||||||    
T  45994576 ccaaggctggattcgaatccaggaccttggttaagctagaagagacctgttccatctcatctaaa 45994512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 51626288 - 51626410
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||||| ||| || |||||||||| ||||||||||||||||    
T  51626288 aaatcgggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactgctg 51626387  T
Q  241 catgcccaaggctgaattcgaac 263  Q
    |||||||||||||| ||||||||    
T  51626388 catgcccaaggctggattcgaac 51626410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 13948587 - 13948697
Alignment:
Q  154 tccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggct 253  Q
    ||||||||||||||| ||||||||||||||||| |||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||| |||||||||    
T  13948587 tccgcgcgcaactgcagagactaatccctcgagcattgtgagattcaaatggacggtagactctccctaagagttttaacactgctgcatacccaaggct 13948686  T
Q  254 gaattcgaacc 264  Q
    | |||||||||    
T  13948687 ggattcgaacc 13948697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 147 - 309
Target Start/End: Complemental strand, 35972496 - 35972334
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcc 246  Q
    |||||||||||| ||||||||||||||||||||||||||  || |||||| |||||||||||| |  |||||||||| ||||||||| |||||| |||||    
T  35972496 ggtatcctccgcacgcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcc 35972397  T
Q  247 caaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    || ||||| ||||||||| |  |||||  |||||||||||||| || ||| ||||||||||||    
T  35972396 catggctggattcgaacccaagaccttggttaagctagaagaggcccgttccatctcatctaa 35972334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 149 - 272
Target Start/End: Original strand, 46250545 - 46250668
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccca 248  Q
    |||||||| ||| |||| |||||||||||| | ||||| || |||||| |||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  46250545 tatcctccacgcacaaccgcggagactaattcttcgagcatcgtgggacccaaatgggcggcaggctttccataagagttttaacactgctgcatgccca 46250644  T
Q  249 aggctgaattcgaacctagaacct 272  Q
    || ||| |||||||||||| ||||    
T  46250645 agactggattcgaacctaggacct 46250668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 141 - 309
Target Start/End: Complemental strand, 7096254 - 7096087
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||||||||| |||||| ||||||| | ||||||||| || ||| |||||  || | |||||||||||| |||||||||||||||||||||  |||||    
T  7096254 aaatcgggtatc-tccgcgtgcaactgtgcagactaatctcttgagcattgtaagacctaaatgggcggtaagctctccctaagagttttaactttgctg 7096156  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||| | |||| ||| |||| |||| | ||||||  ||||||||||||| |||||| |||||||||||||    
T  7096155 catactcaagactgtattcaaacccaaaaccttggttaagctagaagaaacctgtgtcatctcatctaa 7096087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 17135247 - 17135092
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccca 248  Q
    ||||||||| ||||||||   |||||||||||||||||| || |||||  |||||| |||| |  |||||||||||||||||||| ||||||||||| ||    
T  17135247 tatcctccgtgcgcaacttttgagactaatccctcgagtcttctgggactcaaatgcgcggcaaactctccctaagagttttaacgctgctgcatgcaca 17135148  T
Q  249 aggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcat 305  Q
    |||||| ||||||| |||| || || |||||||||||||||||  || |||||||||    
T  17135147 aggctggattcgaa-ctaggactttgattaagctagaagagacacgtgtcatctcat 17135092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 33529409 - 33529325
Alignment:
Q  148 gtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaa 232  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||||||    
T  33529409 gtatcctccgtgcgcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccctaagagttttaa 33529325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 145 - 306
Target Start/End: Original strand, 32005132 - 32005298
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactg-----ct 239  Q
    ||||||||||||||||  || |||||||||||||| |||||| ||| || |||| |||| ||||| || ||||||||||||||||||||||||      |    
T  32005132 cgggtatcctccgcgcataattgcggagactaatctctcgagcattttgagatctaaataggcggcagactctccctaagagttttaacactgatgcaat 32005231  T
Q  240 gcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatc 306  Q
    |||||||||| |||||||||||||  || || ||  ||||| |||||||||||| || |||||||||    
T  32005232 gcatgcccaaagctgaattcgaactcaggactttggttaagttagaagagacctattccatctcatc 32005298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 145 - 305
Target Start/End: Original strand, 38844154 - 38844314
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    ||||||||||| ||||| ||| |  |||||||||| |||||| ||||||||   ||||||||||| || |||| ||||||||||||||| ||| ||||||    
T  38844154 cgggtatcctctgcgcgtaacagtagagactaatctctcgagcattgtgggggtcaaatgggcggcagactcttcctaagagttttaacgctgttgcatg 38844253  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcat 305  Q
    ||||| |||| ||||||||  |  |||||  ||||||||||||||||  ||| ||||||||    
T  38844254 cccaaagctggattcgaactcatgaccttggttaagctagaagagactcgttccatctcat 38844314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 310
Target Start/End: Original strand, 56447115 - 56447273
Alignment:
Q  151 tcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaag 250  Q
    ||||| |||||||| |||  ||| ||||||||| ||| |||||| |||||||||||  | |  |||||||||||||||||||||||||||||||||||      
T  56447115 tcctctgcgcgcaattgcatagattaatccctcaagtcttgtgg-atccaaatgggtagcaaactctccctaagagttttaacactgctgcatgcccata 56447213  T
Q  251 gctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |||| |||||||||||| || ||  |||| |||||||| ||| ||  |||||| ||||||    
T  56447214 gctggattcgaacctaggactttggttaaactagaagaaacccgtgacatctcttctaaa 56447273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 309
Target Start/End: Complemental strand, 13686741 - 13686592
Alignment:
Q  161 gcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccct-aagagttttaacactgctgcatgcccaaggctgaattc 259  Q
    ||||||| ||||||||||| ||||||  ||||| || |||||||| ||| |  |||||||| |||||||||||| |||||||| |||||||| || ||||    
T  13686741 gcaactgtggagactaatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattc 13686642  T
Q  260 gaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||| || |||||  |||||| ||||||||||  |  ||||||||||||    
T  13686641 gaacccaggaccttggttaagcaagaagagacccatgccatctcatctaa 13686592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 3649057 - 3649137
Alignment:
Q  170 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaag 250  Q
    ||||||||||| |||||| ||||| |||||||||| |||| |  ||||||||||||||||||||  || ||||||||||||    
T  3649057 gagactaatccttcgagtcttgtgcgatccaaatgagcggaaaactctccctaagagttttaacgttgttgcatgcccaag 3649137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 11140540 - 11140469
Alignment:
Q  217 tccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaaga 288  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||| | || |||||  |||||||||||||    
T  11140540 tccctaagagttttaaagctgctgcatgcccaaggctggattcgaaaccaggaccttggttaagctagaaga 11140469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 51853828 - 51853707
Alignment:
Q  168 cggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctag 267  Q
    |||||||||||||||||||||||||| || | |||||| | | |  || ||| ||||||||||||    |||||||||||||||||||||||||||| ||    
T  51853828 cggagactaatccctcgagtattgtgagaccaaaatggaccgcaaactttcc-taagagttttaaggaagctgcatgcccaaggctgaattcgaacc-ag 51853731  T
Q  268 aaccttaattaagctagaagagac 291  Q
    ||| ||  ||||| ||||||||||    
T  51853730 aactttggttaagttagaagagac 51853707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 14042984 - 14042859
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||| |||||| ||||| |||  ||||||| ||||||| ||| ||||||| |||||||||| ||  | | |||||| |||||||| ||| | ||||||||    
T  14042984 cgggcatcctctgcgcgtaaccacggagacaaatcccttgagcattgtggaatccaaatggacgacatgttctccccaagagtttaaacgcggctgcatg 14042885  T
Q  245 cccaaggctgaattcgaacctagaac 270  Q
    |||||| ||  ||||||||| |||||    
T  14042884 cccaagacttgattcgaacccagaac 14042859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 15133528 - 15133473
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaa 202  Q
    ||||||||||||||||||||||||||||||||| ||| |  ||||||||| |||||    
T  15133528 ggtatcctccgcgcgcaactgcggagactaatctctcaaacattgtgggacccaaa 15133473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 18841639 - 18841556
Alignment:
Q  147 ggtatcctccgcgcgcaact-gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttt 229  Q
    ||||||||||| |||||||| |||||||||||||||| |||  |||| |||||||||| ||||| |  |||| |||||||||||    
T  18841639 ggtatcctccgtgcgcaacttgcggagactaatcccttgagccttgtaggatccaaattggcggcaaactctacctaagagttt 18841556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 309
Target Start/End: Original strand, 22189399 - 22189538
Alignment:
Q  170 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 269  Q
    ||||||||| |||||||  |||||||| ||| || ||||| |  |||| ||||||||||||||   |||||||||| ||||| || ||||||||   | |    
T  22189399 gagactaattcctcgagccttgtgggacccatataggcggcaatctctacctaagagttttaatgttgctgcatgcacaaggttggattcgaactctgga 22189498  T
Q  270 ccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||  ||||||||||||||||   | |||||||||||||    
T  22189499 ccttggttaagctagaagagactcatgtcatctcatctaa 22189538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 47023532 - 47023429
Alignment:
Q  170 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 269  Q
    ||||||||||| |||||| |||||||| |||||||| ||  |  ||||||||||||||||||||  || |||||||| ||| ||| ||| ||||| || |    
T  47023532 gagactaatccttcgagtcttgtgggacccaaatggacgacaaactctccctaagagttttaactttgttgcatgcctaagtctggattggaaccaagga 47023433  T
Q  270 cctt 273  Q
    ||||    
T  47023432 cctt 47023429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 3976713 - 3976641
Alignment:
Q  161 gcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaac 233  Q
    |||| ||| ||||| |||||  ||||| |||||||||||||||||||||||   ||||||||| |||||||||    
T  3976713 gcaattgcagagaccaatcctacgagtcttgtgggatccaaatgggcggtaaaatctccctaaaagttttaac 3976641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 37241358 - 37241394
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaa 177  Q
    ||||| |||||||||||||||||||||||||||||||    
T  37241358 aaatcaggtatcctccgcgcgcaactgcggagactaa 37241394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 16994251 - 16994158
Alignment:
Q  141 aaatcgggtatcctccgcgcg--caactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaa 232  Q
    ||||||||||||||| || ||  |||||||||||||||||| ||||||| |||||| | | |||||||| | |  |||||| | ||||||||||    
T  16994251 aaatcgggtatcctctgcacgtgcaactgcggagactaatcactcgagtcttgtggaacctaaatgggcagcaaactctcctttagagttttaa 16994158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 28408619 - 28408537
Alignment:
Q  168 cggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaag 250  Q
    |||| |||| || ||||||| ||||| ||||||||||||||| |  |||||| ||||| |||||||  ||||||| |||||||    
T  28408619 cggaaactattctctcgagtcttgtgagatccaaatgggcggcaaactctccataagaattttaacgatgctgcacgcccaag 28408537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 56425970 - 56425897
Alignment:
Q  219 cctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacc 292  Q
    ||||| ||||||||  ||||  |||||| |||||||||||| ||| ||| ||||||||||||| | ||||||||    
T  56425970 cctaacagttttaatgctgcgacatgcctaaggctgaattcaaacttaggaccttaattaagcaaaaagagacc 56425897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 22017605 - 22017525
Alignment:
Q  159 gcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgct 239  Q
    |||||||||  |||| ||||| |||||  |||||| ||| ||||| ||||| | ||| |||||||| ||||||||||||||    
T  22017605 gcgcaactgtagagattaatcgctcgatcattgtgtgattcaaataggcggcaagctttccctaagggttttaacactgct 22017525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 9e-62; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 145 - 309
Target Start/End: Complemental strand, 29059960 - 29059796
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  29059960 cgggtatcctccgcgcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 29059861  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||| ||||||||| || |||||  ||||||||||||||||| ||| ||||||||||||    
T  29059860 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaa 29059796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 145 - 306
Target Start/End: Complemental strand, 31492258 - 31492097
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||    
T  31492258 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgctgcatg 31492159  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatc 306  Q
    |||||||||| ||||||||| || |||||  ||||||||||||||||| ||| |||||||||    
T  31492158 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatc 31492097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 141 - 309
Target Start/End: Original strand, 8839262 - 8839431
Alignment:
Q  141 aaatcgggtatcctccgcg--cgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgc 238  Q
    |||||||||||| ||||||  ||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||  ||||||||||||||||||| ||||    
T  8839262 aaatcgggtatc-tccgcgtgcgcaattgcggagactaatccctcgagtattgtgggatctaaataggcggcagattctccctaagagttttaacgctgc 8839360  T
Q  239 tgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||||||||| ||||||||| || |||||  ||||||||||||||||| ||||||||||||||||    
T  8839361 tgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaa 8839431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 158 - 310
Target Start/End: Original strand, 19477249 - 19477400
Alignment:
Q  158 cgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaat 257  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||| ||| | ||||||||||||||||||||||||| |||||||||||||||| ||    
T  19477249 cgcgcaactgcggagactaatccctc-agcattgtgggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggat 19477347  T
Q  258 tcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    || |||| ||||||||  ||||||||||||||||| ||| |||||||||||||    
T  19477348 tcaaacccagaaccttggttaagctagaagagacccgttccatctcatctaaa 19477400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 147 - 310
Target Start/End: Original strand, 21747028 - 21747190
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcc 246  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| |||| |||||||    
T  21747028 ggtatcctccgcgcacaactgcgaagactaatccctcgaggattgtgggacccaaatgggtggtaggctctccctaagagttttaacgctgcagcatgcc 21747127  T
Q  247 caaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
     || |||| ||||| ||| || |||||  ||||| ||||||||||| ||| |||||||||||||    
T  21747128 taaagctggattcg-acccaggaccttggttaagttagaagagacccgttccatctcatctaaa 21747190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 145 - 309
Target Start/End: Complemental strand, 28537541 - 28537381
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||||||||| |||| ||||||||||||||||||||||| || ||    ||| |||||||||||| |||||||||||||||||||||||  || ||||||    
T  28537541 cgggtatccttcgcgtgcaactgcggagactaatccctcaagcat----ggacccaaatgggcggcaggctctccctaagagttttaacgttgttgcatg 28537446  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||| ||||||||| | |||||| |||||| ||||||||||| ||| ||||||||||||    
T  28537445 cccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgttccatctcatctaa 28537381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 175 - 309
Target Start/End: Original strand, 13254117 - 13254251
Alignment:
Q  175 taatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaacctta 274  Q
    |||||||||||| ||||||||| | |||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||  || |||||     
T  13254117 taatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttg 13254216  T
Q  275 attaagctagaagagacctgtttcatctcatctaa 309  Q
     ||||||||||||||||| ||| ||||||||||||    
T  13254217 gttaagctagaagagacccgttccatctcatctaa 13254251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 148 - 309
Target Start/End: Complemental strand, 20207649 - 20207489
Alignment:
Q  148 gtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccc 247  Q
    |||||||| | |||||||||||||||||||||||||||| ||||| ||||||||||| |||| | ||||||| |||||||||||||  || | ||||||     
T  20207649 gtatcctctgtgcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctccttaagagttttaacgttgttacatgcct 20207550  T
Q  248 aaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||||||||| ||||| | || |||| ||||||||||||| | |  | |||||||||||||    
T  20207549 aaggctgaattagaaccca-aatcttagttaagctagaagaaatccatatcatctcatctaa 20207489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 145 - 310
Target Start/End: Complemental strand, 35708001 - 35707837
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||||| || | | ||||||||||| |||||||  || ||||||    
T  35708001 cgggtatcctccacgcgcaactgcagagactaatccctcgagcattgtaggatctaaatgggaggcaagttctccctaagaattttaacgttgttgcatg 35707902  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
     |||| | || ||||||||| ||||||||  |||| ||||||||||||||||  |||| |||||||    
T  35707901 tccaaagttggattcgaacc-agaaccttggttaaactagaagagacctgttcaatctaatctaaa 35707837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 141 - 310
Target Start/End: Original strand, 42741791 - 42741963
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||| | ||| ||||||||| || ||| ||||||||| ||||||||||||||||    
T  42741791 aaatcgggtatcctccgcgcgcaactgcagagattaatccctcgagtattat-ggacccaaatgggtggcaggttctccctaaaagttttaacactgctg 42741889  T
Q  241 c----atgcccaaggctga-attcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |    ||| |  || || | |||||||||||| || ||  ||||| ||||||||||||||| |||||||||||||    
T  42741890 cgcaaatg-cggagactaatattcgaacctaggacattggttaagatagaagagacctgttccatctcatctaaa 42741963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 141 - 309
Target Start/End: Complemental strand, 46373834 - 46373664
Alignment:
Q  141 aaatcgggtatcctccgcgcgc--aactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgc 238  Q
    |||||||||||| |||||||||  ||||||  ||||||||| |||||| |||||| || |||||| ||||| | |||||||||| ||||||||||  ||     
T  46373834 aaatcgggtatcttccgcgcgcgaaactgccaagactaatctctcgagcattgtgtgacccaaataggcggcaagctctccctacgagttttaacgatgt 46373735  T
Q  239 tgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    || ||||||||| ||| ||||||||| || | |||  ||||||||||||||||| |  |||||||||||||    
T  46373734 tgtatgcccaagactggattcgaacccaggatcttgcttaagctagaagagacccgcgtcatctcatctaa 46373664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 11486730 - 11486839
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||||||||||||||||||||||  |||||||||| || ||| ||||||| | |||||||||||| | ||||| | ||||||||||||||| | ||||||    
T  11486730 cgggtatcctccgcgcgcaactgtagagactaatctcttgagcattgtggaacccaaatgggcggcaagctcttcttaagagttttaacacagatgcatg 11486829  T
Q  245 cccaaggctg 254  Q
    ||||||||||    
T  11486830 cccaaggctg 11486839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 37339715 - 37339803
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttt 229  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||||| ||||| || ||||| ||||||||||    
T  37339715 aaatcgggtatcctccgtgcgcaactgcggagactaatccctcgagcattatgggacccaaataggcggcagactctcactaagagttt 37339803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 264
Target Start/End: Complemental strand, 24172364 - 24172243
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctcccta--agagttttaacactgctgca 242  Q
    ||||||| ||||||||||||||||  |||||||||| ||||| |||||||||||||| ||||||| | |||||| |||  |||||||||||  || ||||    
T  24172364 cgggtatactccgcgcgcaactgcatagactaatccttcgagcattgtgggatccaagtgggcggcaagctctcactaagagagttttaacgttgttgca 24172265  T
Q  243 tgcccaaggctgaattcgaacc 264  Q
    ||||||||| || |||||||||    
T  24172264 tgcccaaggttggattcgaacc 24172243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 7265325 - 7265464
Alignment:
Q  171 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 270  Q
    |||||||||  ||||||||||||||| ||||||| || | |  |||||||||||||||||||||  |||||||||||||| ||  || |||||| | |||    
T  7265325 agactaatcattcgagtattgtgggacccaaatgagcagcaaactctccctaagagttttaacatcgctgcatgcccaagactagatccgaacccaaaac 7265424  T
Q  271 cttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
     ||  ||||||||||||||||| || ||||||||| ||||    
T  7265425 tttggttaagctagaagagacccgtgtcatctcatataaa 7265464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 14545070 - 14545000
Alignment:
Q  173 actaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcat 243  Q
    |||||||| ||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||    
T  14545070 actaatccatcgagcattgtgggacccaaatggacggcaggctctccctaagagttttaacactgctgcat 14545000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 141 - 291
Target Start/End: Original strand, 24579434 - 24579584
Alignment:
Q  141 aaatcgggtatcctccgcgc--gcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgc 238  Q
    ||||||||||||||||| |   |||||||| |||||||||| ||||||| || | |||||||||||| ||| |  ||||||||||| |||||| || |||    
T  24579434 aaatcgggtatcctccgtgtatgcaactgcagagactaatctctcgagtcttctaggatccaaatggacggca--ctctccctaagtgttttatcaatgc 24579531  T
Q  239 tgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagac 291  Q
    |||||||  || |||||||||||||  ||||||||  |||| |||||||||||    
T  24579532 tgcatgcgtaaagctgaattcgaactcagaaccttggttaaactagaagagac 24579584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 31776571 - 31776494
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaag 224  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||||||| |  |||||||||||||    
T  31776571 ggtatcctccgcccgcaactgcgaagattaatccctcgagtattgtgggacccaaatgggcagctggctctccctaag 31776494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 40099302 - 40099422
Alignment:
Q  189 ttgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaaga 288  Q
    ||||||||  ||||||||||| | ||||||||||||||||||||  |||||||||  |||| |||| |||||||   || | |||| |||||||||||||    
T  40099302 ttgtgggactcaaatgggcggcaagctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaaga 40099401  T
Q  289 gacctgtttcatctcatctaa 309  Q
    |||| ||| ||||||||||||    
T  40099402 gacccgttccatctcatctaa 40099422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 310
Target Start/End: Original strand, 27484058 - 27484200
Alignment:
Q  168 cggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctag 267  Q
    |||||| ||||||||| || || ||| || |||||| |  || | |||||||| |||||||||||| |||||||||||||| ||||| |||  |||  ||    
T  27484058 cggagattaatccctcaagcatcgtgagacccaaatcgatggaaagctctccccaagagttttaacgctgctgcatgcccatggctggatttaaactcag 27484157  T
Q  268 aaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
     |||||  |||||||||||||||| ||| ||||||||||||||    
T  27484158 gaccttggttaagctagaagagacttgtgtcatctcatctaaa 27484200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 205 - 310
Target Start/End: Original strand, 7190405 - 7190510
Alignment:
Q  205 ggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctca 304  Q
    ||||||| | ||||||||| ||||||||||| ||||||||||||| ||||||||| |||  | ||||||  |||||||||||||||  | || |||||||    
T  7190405 ggcggtaagttctccctaaaagttttaacacggctgcatgcccaatgctgaattcaaactcataaccttggttaagctagaagagatttattccatctca 7190504  T
Q  305 tctaaa 310  Q
    ||||||    
T  7190505 tctaaa 7190510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 2657888 - 2657986
Alignment:
Q  211 aggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||||||| |||||||||||||  ||||||||||||||||||| ||| ||||  ||  |||| |||||| ||||||||||  ||| ||||||||||||    
T  2657888 aggctctccttaagagttttaacgttgctgcatgcccaaggctgtatttgaactcagggccttgattaagttagaagagactcgttccatctcatctaa 2657986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 28665244 - 28665194
Alignment:
Q  146 gggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtggga 196  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  28665244 gggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtggga 28665194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 291
Target Start/End: Original strand, 28828756 - 28828897
Alignment:
Q  150 atcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaa 249  Q
    |||||||||| ||||||||| |||||||||| | |||  ||||| || |||||||| || ||  ||||| || ||||||||||| ||||| ||||   ||    
T  28828756 atcctccgcgagcaactgcgcagactaatccattgagccttgtgagacccaaatggacgataaactctctctgagagttttaacgctgctacatgtttaa 28828855  T
Q  250 ggctgaattcgaacctagaaccttaattaagctagaagagac 291  Q
     | |||||||||||||| ||  ||| ||||||||||||||||    
T  28828856 agttgaattcgaacctaaaatattagttaagctagaagagac 28828897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 29428792 - 29428857
Alignment:
Q  159 gcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaag 224  Q
    |||||||||| ||||||||||||||||  |||||||||||||||||| ||| |  |||||||||||    
T  29428792 gcgcaactgcagagactaatccctcgaacattgtgggatccaaatggtcggcaaactctccctaag 29428857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 280
Target Start/End: Original strand, 23933633 - 23933772
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||| |||||||||| | | |||| ||| |||||||||||||| |||||||| | | | |||||||||| |  |||||||||| ||||||||  ||  ||    
T  23933633 aaattgggtatcctctgtgtgcaattgcagagactaatccctcaagtattgtcgaacctaaatgggcggcaaactctccctaaaagttttaatgctcttg 23933732  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaag 280  Q
    || || |||| ||| ||||||||| || |||||| |||||    
T  23933733 caagctcaagactggattcgaacccaggaccttagttaag 23933772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 309
Target Start/End: Original strand, 4059705 - 4059842
Alignment:
Q  171 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 270  Q
    ||||||||||||||||| ||||| || ||||||   ||| |  ||||| ||||||||||||||  || ||||||| |||||||| ||||||||  || ||    
T  4059705 agactaatccctcgagtcttgtgtgacccaaataaacggaaaactctctctaagagttttaacgatgttgcatgctcaaggctgtattcgaactcag-ac 4059803  T
Q  271 cttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||  |||| ||| ||||||| ||| |||| ||||||||    
T  4059804 cttggttaaactaaaagagacatgtgtcatgtcatctaa 4059842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 45779017 - 45778971
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtg 193  Q
    ||||||||||   ||||||||||||||||||||||||||||||||||    
T  45779017 ggtatcctccattcgcaactgcggagactaatccctcgagtattgtg 45778971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 36821069 - 36821113
Alignment:
Q  148 gtatcctccgcgcgcaactgcggagactaatccctcgagtattgt 192  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||    
T  36821069 gtatcctctgcgcgcaactgcagagactaatccctcgagcattgt 36821113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 1424716 - 1424669
Alignment:
Q  157 gcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatg 204  Q
    ||||||||||||||||||||||| ||| ||| |||||||| |||||||    
T  1424716 gcgcgcaactgcggagactaatctctcaagtcttgtgggacccaaatg 1424669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 25241107 - 25241198
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaa 232  Q
    |||||| |||| || ||||||||| || ||||||||||| ||||||| ||||| |||  |||||||||  |  |||||||||| ||||||||    
T  25241107 aaatcgagtatgcttcgcgcgcaaatgtggagactaatctctcgagtcttgtgagatttaaatgggcgacaaactctccctaaaagttttaa 25241198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 2371224 - 2371139
Alignment:
Q  224 gagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||| ||||||||| || ||| |||||||||||   || |||||| | || |||||||||| | || |||||||||||||    
T  2371224 gagttttaacgctgctgcattcctaagcctgaattcgaattcaggaccttagtcaatctagaagagaaccgtgtcatctcatctaa 2371139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 14552515 - 14552482
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaat 178  Q
    ||||||||||| ||||||||||||||||||||||    
T  14552515 cgggtatcctctgcgcgcaactgcggagactaat 14552482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 32470069 - 32469986
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgag--tattgtgggatccaaatgggcggtaggctctccctaagagtttt 230  Q
    ||||||||||| ||||||||| | ||||||| ||||||  ||||||| || |||||||| ||| | | ||||||||| ||||||    
T  32470069 tatcctccgcgtgcaactgcgaacactaatctctcgagcatattgtgagacccaaatggacggcaagttctccctaaaagtttt 32469986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 145 - 317
Target Start/End: Complemental strand, 2744088 - 2743916
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||  | ||||||||||||||||||||||||||||||||    
T  2744088 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatg 2743989  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaatgttctt 317  Q
    |||||||||| ||||||||| || |||||  ||||||||||||||||| ||| ||||||||||||||| ||||    
T  2743988 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaaatgctctt 2743916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 141 - 309
Target Start/End: Original strand, 4125006 - 4125174
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  4125006 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtgctg 4125105  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||||||  ||||||||| || || ||  ||||||||||||||||| ||| ||||||||||||    
T  4125106 catgcccaaggcttgattcgaacccaggacattggttaagctagaagagacccgttccatctcatctaa 4125174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 147 - 309
Target Start/End: Original strand, 19715713 - 19715876
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccc-tcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgc 245  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| | ||||||||| ||||||||||| |||||||||||    
T  19715713 ggtattctccgcgcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaacgctgctgcatgc 19715812  T
Q  246 ccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||||||| ||||||||| || |||||  ||||||||||| |||| |||| ||||||||||||    
T  19715813 ccaaggctggattcgaacccaggaccttggttaagctagaaaagacatgttccatctcatctaa 19715876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 145 - 309
Target Start/End: Original strand, 13468731 - 13468895
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||||||||  ||||||||||| || ||||| |||||||||||||| ||||| ||||    
T  13468731 cgggtatcctccgtgcgcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgctacatg 13468830  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||| ||||||||| || |||||  ||||||||||||||||| ||| ||||| ||||||    
T  13468831 cccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctaatctaa 13468895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 151 - 309
Target Start/End: Original strand, 12958077 - 12958235
Alignment:
Q  151 tcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaag 250  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||  ||||||||||||||||||||||| |||||||||||||||     
T  12958077 tcctccgcgcgctactgcggagactaatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaat 12958176  T
Q  251 gctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||| |||| |||| |  |||||  ||||||||||||||||  ||| ||||||||||||    
T  12958177 gctggattcaaacccatgaccttggttaagctagaagagactagttccatctcatctaa 12958235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 145 - 309
Target Start/End: Complemental strand, 30936159 - 30935995
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||||| | ||||||||||||||||||||||||||||||||  ||||| ||| |||||||||||| |||||||||||||||||||||||  |||||||||    
T  30936159 cgggtaacatccgcgcgcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttgctgcatg 30936060  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |  ||||||| ||||||||  || |||||  ||||| ||||||||||| ||| ||||||||||||    
T  30936059 cttaaggctggattcgaactcaggaccttggttaagttagaagagacccgttccatctcatctaa 30935995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 7839239 - 7839343
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||  ||||||||||    
T  7839239 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaaagctgctgcatg 7839338  T
Q  245 cccaa 249  Q
    |||||    
T  7839339 cccaa 7839343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 170 - 291
Target Start/End: Complemental strand, 15683059 - 15682938
Alignment:
Q  170 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaa 269  Q
    |||| |||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||  || |    
T  15683059 gagattaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcagga 15682960  T
Q  270 ccttaattaagctagaagagac 291  Q
    |||| |||||||||||||||||    
T  15682959 ccttgattaagctagaagagac 15682938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 149 - 310
Target Start/End: Original strand, 30055991 - 30056152
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccca 248  Q
    ||||| |||| |||||||   ||||||||||||||||| ||||||| | |||||||| ||| ||||||||||||||||||||||  |||||||||||| |    
T  30055991 tatcccccgcacgcaactaaagagactaatccctcgagcattgtggaacccaaatggacggcaggctctccctaagagttttaatgctgctgcatgccta 30056090  T
Q  249 aggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |||||| ||| ||||| |  |||||  |||||||||||||||| |||| |||||||||||||    
T  30056091 aggctggatttgaacccatgaccttcgttaagctagaagagacatgttccatctcatctaaa 30056152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 309
Target Start/End: Original strand, 36994502 - 36994650
Alignment:
Q  161 gcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcg 260  Q
    |||||||| |||||||||||||||||  |||||||| |||||||||| | |  |||||| ||||||||||||| |||||||||| ||||||||| |||||    
T  36994502 gcaactgcagagactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcg 36994601  T
Q  261 aacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||| || |||||  |||| ||||||||||| |||  ||||| ||||||    
T  36994602 aacccaggaccttggttaaactagaagagacatgtgccatcttatctaa 36994650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 24988653 - 24988522
Alignment:
Q  146 gggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggct-----ctccctaagagttttaacactgctg 240  Q
    ||||||||||   |||||| |||||||||||||||||||||||||||||||  |||||| |||| | |||     ||||| |||||||||| ||||||||    
T  24988653 gggtatcctcaatgcgcaattgcggagactaatccctcgagtattgtgggactcaaatgagcggcaagctatcccctccccaagagttttagcactgctg 24988554  T
Q  241 catgcccaaggctgaattcgaacctagaacct 272  Q
    |||||||||||||| |||| ||||||||||||    
T  24988553 catgcccaaggctggattcaaacctagaacct 24988522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 188 - 309
Target Start/End: Complemental strand, 35207112 - 35206991
Alignment:
Q  188 attgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaag 287  Q
    ||||||||| |||||||| ||  | ||| ||| ||||||||||||| |||||||||| |||||| | |||||||||| |||| |||  ||||| ||||||    
T  35207112 attgtgggacccaaatggacgacatgctttccttaagagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaag 35207013  T
Q  288 agacctgtttcatctcatctaa 309  Q
    ||||||||||||||||||||||    
T  35207012 agacctgtttcatctcatctaa 35206991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 292
Target Start/End: Original strand, 16701386 - 16701512
Alignment:
Q  166 tgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacct 265  Q
    |||||||||||||| ||||| | ||||||||  |||||||||   |  ||||||||||||| |||||  || ||| ||| ||||||||| |||||||||     
T  16701386 tgcggagactaatctctcgaatcttgtgggactcaaatgggctacaaactctccctaagaggtttaaagctactgtatgtccaaggctggattcgaaccc 16701485  T
Q  266 agaaccttaattaagctagaagagacc 292  Q
    ||||||||| ||||| |||||||||||    
T  16701486 agaaccttagttaagatagaagagacc 16701512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 39086905 - 39086856
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtggga 196  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  39086905 ggtatcctccgcgtgcaactgcggagactaatccctcgagcattgtggga 39086856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 27121804 - 27121899
Alignment:
Q  213 gctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatcta 308  Q
    ||||| ||||| ||||||||||||| |||||||  || |||| ||||||||| ||||| ||  ||||||||||||||||| || | ||||||||||    
T  27121804 gctcttcctaaaagttttaacactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagacccgtgttatctcatcta 27121899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 8521856 - 8521791
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggc 207  Q
    |||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||  |||||||||    
T  8521856 aaatcgggtatcttccgcgcgcaactg-ggatactaatccctcgagcattgtgggactcaaatgggc 8521791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 310
Target Start/End: Original strand, 4321558 - 4321655
Alignment:
Q  213 gctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |||||||||||||||||||||  |  |||||| | ||| ||| |||| |||| ||||||||| ||||||||||||| | || | ||||||||||||||    
T  4321558 gctctccctaagagttttaacgttattgcatgtctaagactggattcaaacccagaaccttacttaagctagaagaaatctatgtcatctcatctaaa 4321655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 23981478 - 23981623
Alignment:
Q  166 tgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctct--ccctaagagttttaacactgctgcatgcccaaggctgaattcgaac 263  Q
    ||||||||||||| |||||||  ||||  || ||||||||| || |  ||||  | ||||||||||||||  | ||||||| |||| ||||||||||||     
T  23981478 tgcggagactaattcctcgagccttgtacgacccaaatgggtggcaaactctttctctaagagttttaacgttcctgcatgtccaaagctgaattcgaat 23981577  T
Q  264 ctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    | |||||| || |||||||| |||||||  || |||||| ||||||    
T  23981578 ccagaaccctagttaagctaaaagagactcgtgtcatctgatctaa 23981623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 8034152 - 8034203
Alignment:
Q  182 tcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaac 233  Q
    ||||||||||||||| |||||||| | | | |||||||||||||||||||||    
T  8034152 tcgagtattgtgggacccaaatggactgcaagctctccctaagagttttaac 8034203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 40320255 - 40320193
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaat 203  Q
    |||| ||||||||||||||  ||||| | |||||||||| |||||| || |||||||||||||    
T  40320255 aaattgggtatcctccgcgtacaactacagagactaatctctcgagcatcgtgggatccaaat 40320193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 310
Target Start/End: Original strand, 32422811 - 32422924
Alignment:
Q  198 ccaaatgggcggtaggctctccctaagagttttaacactgctgca-tgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtt 296  Q
    |||||||||||| |   |||||| || |||||||||||||||||| ||||||||  |||||||||  | || | |||  ||||| | |||||||| |||     
T  32422811 ccaaatgggcggcaatttctcccaaaaagttttaacactgctgcattgcccaagattgaattcgattccaggatcttggttaaggttgaagagacttgtg 32422910  T
Q  297 tcatctcatctaaa 310  Q
    ||||||||||||||    
T  32422911 tcatctcatctaaa 32422924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 291
Target Start/End: Complemental strand, 44639112 - 44638992
Alignment:
Q  171 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaac 270  Q
    ||||||||| | | |||||||||||   |||||| |||| |  ||||||||||||||||||||  || ||||||| ||||| || |||| ||   || ||    
T  44639112 agactaatctcccaagtattgtggggctcaaatgtgcggcaaactctccctaagagttttaacgttgttgcatgctcaaggttggattcaaattcaggac 44639013  T
Q  271 cttaattaagctagaagagac 291  Q
    ||| |||||| ||||||||||    
T  44639012 cttgattaagttagaagagac 44638992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 26486 - 26339
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  26486 cgggtatcctccgcgcgcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgctgcatg 26387  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacc 292  Q
    |||||||||| ||||||||| || |||||  |||||||||||||||||    
T  26386 cccaaggctggattcgaacccaggaccttggttaagctagaagagacc 26339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 141 - 309
Target Start/End: Complemental strand, 5394555 - 5394388
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||| |||||||||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  5394555 aaatcgagtatcctccgcgtgcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaaca-tgctg 5394457  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||||||| ||||||||| || |||||  ||||||||||||||||  ||| ||||||||||||    
T  5394456 catgcccaaggctggattcgaacccaggaccttggttaagctagaagagactcgttccatctcatctaa 5394388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 145 - 309
Target Start/End: Original strand, 31579215 - 31579379
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    ||||||||||||||||||||||||||| |||||| ||||||| |||||||||   |||||||||| || |||||||||| ||||||||||||| ||||||    
T  31579215 cgggtatcctccgcgcgcaactgcggaaactaattcctcgagcattgtgggacttaaatgggcggcagactctccctaaaagttttaacactgttgcatg 31579314  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||| ||||||||| |  ||||| |||||||||||||||||| ||| ||||||||||||    
T  31579315 cccaaggctggattcgaacccaagaccttgattaagctagaagagacccgttacatctcatctaa 31579379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 145 - 309
Target Start/End: Original strand, 42745102 - 42745266
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||||||||||||||||||||||| ||||||||||||||||  ||||||| | |||||| ||| | || ||||||||||||||||||||| |||||||||    
T  42745102 cgggtatcctccgcgcgcaactgctgagactaatccctcgaccattgtggaacccaaataggcagcagactctccctaagagttttaacattgctgcatg 42745201  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||| ||||||||| |  |||||  |||||||| |||||||| ||| ||||||||||||    
T  42745202 cccaaggctggattcgaacccaagaccttggttaagctataagagacccgttccatctcatctaa 42745266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 149 - 305
Target Start/End: Original strand, 18105353 - 18105508
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccca 248  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||  ||||||||||| ||||||||| ||||| |||||||  || ||||||||||    
T  18105353 tatcctccgcgcgcaactgcg-agactaatccctcgagtattgtgagactcaaatgggcggcaggctctccataagaattttaacgttgttgcatgccca 18105451  T
Q  249 aggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcat 305  Q
    |||||| ||||||||| || |||||  ||||||||||||||||  ||| ||||||||    
T  18105452 aggctggattcgaacccaggaccttggttaagctagaagagactcgttccatctcat 18105508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 149 - 310
Target Start/End: Original strand, 9438126 - 9438287
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccca 248  Q
    ||||||||||||||||||| ||| ||||||||||| || |||||||||  ||||||||||| ||| ||| ||||||||||||||| ||||||||||||||    
T  9438126 tatcctccgcgcgcaactgtggaaactaatccctcaagcattgtgggacacaaatgggcggcaggttcttcctaagagttttaaccctgctgcatgccca 9438225  T
Q  249 aggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |||||| ||||||||| |  || ||  |||||||| ||||||   ||| |||||||||||||    
T  9438226 aggctggattcgaaccaaagactttggttaagctaaaagagattcgttccatctcatctaaa 9438287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 202 - 309
Target Start/End: Original strand, 44732616 - 44732723
Alignment:
Q  202 atgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatc 301  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||  |||||||| |||||||| ||| ||||    
T  44732616 atgggcggcaggctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccatc 44732715  T
Q  302 tcatctaa 309  Q
    ||||||||    
T  44732716 tcatctaa 44732723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 147 - 309
Target Start/End: Complemental strand, 993906 - 993745
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcc 246  Q
    |||||||||| |||||||| ||||| |||||||| |  |||||||| ||| |||||||||||| | | |||||||||||||||| || ||||||||||||    
T  993906 ggtatcctccacgcgcaacggcggaaactaatccattcagtattgtaggacccaaatgggcggcaagttctccctaagagtttt-acgctgctgcatgcc 993808  T
Q  247 caaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||| |||||||||||| || |||||  |||||||| |||||||  || |||||||||||||    
T  993807 caaggttgaattcgaacccaggaccttggttaagctataagagacacgtgtcatctcatctaa 993745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 12133258 - 12133380
Alignment:
Q  187 tattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaa 286  Q
    |||||| ||| |||||||| ||| |||||||||||||||||||||||  ||||||||| ||||||||| ||||||||| |  ||||| ||||||||||||    
T  12133258 tattgtaggacccaaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaa 12133357  T
Q  287 gagacctgtttcatctcatctaa 309  Q
    |||||  ||| ||||||||||||    
T  12133358 gagactcgttccatctcatctaa 12133380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 175 - 317
Target Start/End: Complemental strand, 33757102 - 33756960
Alignment:
Q  175 taatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaacctta 274  Q
    ||||||||| || |||||| ||| |||||| |||  | ||||| ||||||||||||||| ||  || |||| |||||||||||||||||  ||||||||     
T  33757102 taatccctcaagcattgtgcgattcaaatgagcgacaagctcttcctaagagttttaacgctattgtatgctcaaggctgaattcgaactaagaaccttg 33757003  T
Q  275 attaagctagaagagacctgtttcatctcatctaaatgttctt 317  Q
    |||||||||||||||||| || ||||||||||||| |||||||    
T  33757002 attaagctagaagagacccgtgtcatctcatctaagtgttctt 33756960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 145 - 309
Target Start/End: Complemental strand, 17981652 - 17981489
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||  |||| | ||||||||||||||||||||   || ||||||    
T  17981652 cgggtatcctccgcgcgcaactgcggagactaatctctcgagcattgtgggacccaaat-tgcggcaagctctccctaagagttttaatgttgttgcatg 17981554  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||| ||| |||  ||   || || ||  ||||||||||||||||  ||| ||||||||||||    
T  17981553 cccaagactggatttaaattcaggactttggttaagctagaagagactcgttccatctcatctaa 17981489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 141 - 264
Target Start/End: Original strand, 37179983 - 37180101
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||  ||||||||||| |  |||||||||||||     |||||| ||    
T  37179983 aaatcgggtatcctccgcgcgcaagtgcgtagactaatccctcgagtattgtgggactcaaatgggcggcacactctccctaagag-----acactgttg 37180077  T
Q  241 catgcccaaggctgaattcgaacc 264  Q
    |||| ||||| ||| |||||||||    
T  37180078 catgtccaagactggattcgaacc 37180101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 25423903 - 25423821
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaa 223  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||| |||||||||    
T  25423903 aaatcgggtatcctccacgcgcaactgctgagactaatccctcgagcattgtgggacccaaatgggcggcaggttctccctaa 25423821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 44752199 - 44752344
Alignment:
Q  164 actgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaac 263  Q
    |||| |||||||||||||||||||||||| | | |||||| || || | |||||||| ||||||||||||  || |||||||||||| ||  ||||||||    
T  44752199 actgtggagactaatccctcgagtattgtagaacccaaattggtggcaagctctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaac 44752298  T
Q  264 ctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||| |  ||  |||||||||||||||| ||| |||||||||||||    
T  44752299 ctaggagtttggttaagctagaagagacttgtatcatctcatctaa 44752344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 309
Target Start/End: Original strand, 37568785 - 37568877
Alignment:
Q  217 tccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||  ||||||||||||| ||| ||| ||||||||||||    
T  37568785 tccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccatctcatctaa 37568877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 141 - 291
Target Start/End: Complemental strand, 38464114 - 38463964
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||| |||||||||| ||||||| |||  ||||||||| ||||||||||||||||  ||||| | ||||  |||| | | ||||||||||||  || ||    
T  38464114 aaatcaggtatcctccacgcgcaattgcaaagactaatcactcgagtattgtgggactcaaatagacggttagctccctccaagagttttaacggtgttg 38464015  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagac 291  Q
    |||||||||||||| ||||||| ||||||| ||  ||||| ||||| ||||    
T  38464014 catgcccaaggctggattcgaatctagaactttggttaagttagaaaagac 38463964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 7157600 - 7157507
Alignment:
Q  198 ccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagac 291  Q
    |||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||  |||||||||||| | |||  ||||| ||||||||||    
T  7157600 ccaaataggcggcaggctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagac 7157507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 246
Target Start/End: Original strand, 7020352 - 7020446
Alignment:
Q  151 tcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcc 246  Q
    |||||||||||||||||  |||||||||| |||||| ||||| ||| |||||||||||| | | ||||||||||| |||||||| |||||||||||    
T  7020352 tcctccgcgcgcaactgtcgagactaatcactcgagcattgtaggacccaaatgggcggcaagttctccctaaga-ttttaacattgctgcatgcc 7020446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 38743879 - 38743788
Alignment:
Q  159 gcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaag 250  Q
    ||||||||||||||||||||||||  || |||||| |||||||||| |||| | |||||||| || |||||||||  |||||||||||||||    
T  38743879 gcgcaactgcggagactaatccctaaagcattgtgagatccaaatgagcggcaagctctccccaaaagttttaacgttgctgcatgcccaag 38743788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 264
Target Start/End: Original strand, 38372978 - 38373097
Alignment:
Q  143 atcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgca 242  Q
    |||||||||||||||||||||||||   |||||||| ||| ||| ||||||||| ||  |||||||| | ||||| ||||||||||||| | ||||||||    
T  38372978 atcgggtatcctccgcgcgcaactgtatagactaattccttgagcattgtgggaccc--atgggcggcaagctcttcctaagagttttaccgctgctgca 38373075  T
Q  243 tgcccaaggctgaattcgaacc 264  Q
    |||  |||| || |||||||||    
T  38373076 tgcataaggttggattcgaacc 38373097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 14551633 - 14551565
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcgg 209  Q
    |||||| |||||||| ||||||||||||||||| |||||||||||| ||||| ||| |||||| |||||    
T  14551633 aaatcgagtatcctctgcgcgcaactgcggagattaatccctcgagcattgtaggacccaaataggcgg 14551565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 37092181 - 37092241
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgg 205  Q
    ||||||||||||| || ||||||||||||||||||||||||| | ||||||| ||||||||    
T  37092181 cgggtatcctccgtgcacaactgcggagactaatccctcgagcactgtgggacccaaatgg 37092241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 39401070 - 39401172
Alignment:
Q  160 cgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 259  Q
    ||||||||||||| |||||| | |||| ||||||||| | |||||| ||    ||||||||||| ||||||||   | ||||||||||||||||||||||    
T  39401070 cgcaactgcggagtctaatctcacgagcattgtgggacctaaatggacgacgagctctccctaaaagttttaatgatactgcatgcccaaggctgaattc 39401169  T
Q  260 gaa 262  Q
    |||    
T  39401170 gaa 39401172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 1682181 - 1682132
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtatt 190  Q
    |||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  1682181 aaattgggtatcctctgtgcgcaactgcggagactaatccctcgagtatt 1682132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 14121894 - 14121982
Alignment:
Q  171 agactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 259  Q
    |||||||||||||||| |||||||||  ||||||||||| | | |||| |||||| |||||||  |||||||||  |||| ||||||||    
T  14121894 agactaatccctcgagcattgtgggactcaaatgggcggcaagttctctctaagaattttaacgttgctgcatgttcaagactgaattc 14121982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 17655822 - 17655755
Alignment:
Q  141 aaatcgggtatcctccgcgc--gcaactgcggagactaatccctcgagtattgtgggatccaaatggg 206  Q
    ||||| |||||||||| |||  ||||||||||||||||||||||||||  |||||| |||||||||||    
T  17655822 aaatcaggtatcctcctcgcacgcaactgcggagactaatccctcgagccttgtggaatccaaatggg 17655755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 24412909 - 24413011
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||| |||||||||||  ||| |||||||||||||||| |||| ||||||||||||  ||||| || || | ||||| ||| |||||||||||  |||||    
T  24412909 aaattgggtatcctcctagcggaactgcggagactaattcctcaagtattgtgggactcaaataggtggcaagctct-ccttagagttttaacgttgctg 24413007  T
Q  241 catg 244  Q
    ||||    
T  24413008 catg 24413011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 34483541 - 34483453
Alignment:
Q  220 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||||||| ||| |||||| ||||| ||||||| ||||| ||||| ||  ||||||||||| |||| ||| |||||| ||||||    
T  34483541 ctaagagttttaacgctgttgcatgtccaagactgaatttgaacc-agaactttggttaagctagaaaagacatgtgtcatcttatctaa 34483453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 39562316 - 39562259
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatggg 206  Q
    ||||||||| || |||||||||||| |||||| |||| ||||||||||| ||||||||    
T  39562316 tatcctccgagcacaactgcggagattaatccttcgaatattgtgggattcaaatggg 39562259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 32642964 - 32643028
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaac-tgcggagactaatccctcgagtattgtgggatccaaatg 204  Q
    ||||||||||||||||||| ||||| | | |||||||||| ||||||| ||||||||| ||||||    
T  32642964 aaatcgggtatcctccgcgtgcaacttacagagactaatctctcgagtcttgtgggattcaaatg 32643028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 42905689 - 42905775
Alignment:
Q  223 agagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |||||||||||||||||||||| | |||  || ||||||| |||| |||||| |||||||| |||||| | |  ||||||||||||||    
T  42905689 agagttttaacactgctgcatgacaaagtttggattcgaa-ctaggaccttagttaagctaaaagagatccgcgtcatctcatctaaa 42905775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 28366014 - 28365940
Alignment:
Q  235 ctgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||||||||||||| ||||||||  |  |||||  ||||| ||||||||||  ||| ||||||||||||    
T  28366014 ctgctgcatgcccaaggctgcattcgaactcacgaccttggttaagttagaagagacgcgttccatctcatctaa 28365940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 17627642 - 17627550
Alignment:
Q  217 tccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||||||| |||||||  || |||||||||||||||| ||||||||  || |||||  ||||  ||||||||||  || ||||||| |||||    
T  17627642 tccctaagaattttaacgttgttgcatgcccaaggctggattcgaactcaggaccttggttaaattagaagagacgcgtgtcatctcgtctaa 17627550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 39314547 - 39314487
Alignment:
Q  199 caaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 259  Q
    ||||||||||| |  ||||||||| |||||||||| | |||||||||||||  ||||||||    
T  39314547 caaatgggcggcaaactctccctacgagttttaacgcagctgcatgcccaaaactgaattc 39314487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 146 - 310
Target Start/End: Complemental strand, 22022274 - 22022110
Alignment:
Q  146 gggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgc 245  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||| || | | ||||||||||||||||||  |||||||||||    
T  22022274 gggtatcctccacgtgcaactgcggagactaatccctcgaatattgtgggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgc 22022175  T
Q  246 ccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    ||||||||| ||||||||| | ||||||| ||||||||||||||||||||| |||||||||||||    
T  22022174 ccaaggctggattcgaacccacaaccttagttaagctagaagagacctgttccatctcatctaaa 22022110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 141 - 309
Target Start/End: Complemental strand, 16756241 - 16756073
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||  ||  | ||||||||||||||||||||| || |||    
T  16756241 aaatcgagtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgcttctg 16756142  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||||||| ||||||||| |||| ||||||||  ||||||||||||||| | ||| ||||||||||||    
T  16756141 catgcccaatgctgaattcaaacccagaaccttggttaagctagaagagatccgttccatctcatctaa 16756073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 141 - 289
Target Start/End: Original strand, 18428124 - 18428271
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||  |||||||| | | || |||||||||| ||||||||||||||||    
T  18428124 aaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtggg-gccaaatggacagcagactctccctaaaagttttaacactgctg 18428222  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagag 289  Q
    ||||||||||| || ||||||| | ||||||||  |||||||| |||||    
T  18428223 catgcccaaggttggattcgaatccagaaccttggttaagctacaagag 18428271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 147 - 267
Target Start/End: Original strand, 7242795 - 7242915
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcc 246  Q
    |||||| ||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||| ||||||||||||||||||||  ||||||||| |    
T  7242795 ggtatcttccgcgcgcaactgcggagactaatccctcgagtattatgagattcaaatgggaggtagactctccctaagagttttaacgttgctgcatgtc 7242894  T
Q  247 caaggctgaattcgaacctag 267  Q
    |||| ||| ||||||||||||    
T  7242895 caagactggattcgaacctag 7242915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 145 - 309
Target Start/End: Complemental strand, 28724827 - 28724664
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||||||||||||||||||| ||||||||||||||||||||  ||||| |||  ||||||| ||| || |||| ||||||||||||||||||| ||||||    
T  28724827 cgggtatcctccgcgcgcaattgcggagactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaacactgttgcatg 28724728  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
      |||||||||||||||| | || | ||| |||||||||||||||||  ||| ||||||||||||    
T  28724727 ttcaaggctgaattcgaatccagga-ctttattaagctagaagagactcgttccatctcatctaa 28724664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 9780976 - 9781109
Alignment:
Q  146 gggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgc 245  Q
    |||||| |||||||| ||||| |||| |||||||||||||| ||||||||| ||||||||||||  | |||||||||||||||||||| |||||||||||    
T  9780976 gggtattctccgcgcccaactacggatactaatccctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaacgctgctgcatgc 9781075  T
Q  246 ccaaggctgaattcgaacctagaaccttaattaa 279  Q
    ||||||||| ||||||||  |  |||||||||||    
T  9781076 ccaaggctggattcgaactcaagaccttaattaa 9781109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 36806766 - 36806649
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    ||||||||||||||| |||||||| ||||||||||||||||| ||||||| | |||||||||||| || | |||||||||||||||||| || ||| |||    
T  36806766 cgggtatcctccgcgtgcaactgcagagactaatccctcgagcattgtggaacccaaatgggcggcagacactccctaagagttttaacgctactgtatg 36806667  T
Q  245 cccaaggctgaattcgaa 262  Q
    ||||||||||||||||||    
T  36806666 cccaaggctgaattcgaa 36806649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 309
Target Start/End: Complemental strand, 45806388 - 45806227
Alignment:
Q  148 gtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccc 247  Q
    ||||||||| |||| |||||| ||||||||||  |||| ||||||| ||   |||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  45806388 gtatcctccacgcgtaactgcagagactaatcattcgaatattgtgagacttaaataggcggtatgctctccctaagagttttaaaactgctgcatgccc 45806289  T
Q  248 aaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||| ||||||||||||  || |||||  ||||| ||||||||||| |||  |||||||||||    
T  45806288 aagactgaattcgaactcaggaccttggttaagatagaagagacccgttctatctcatctaa 45806227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 42297430 - 42297523
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| || |||||||| ||| || |||||||||||||||||||| ||||||    
T  42297430 ggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagttttaacgctgctg 42297523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 12035709 - 12035585
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagag-ttttaacactgct 239  Q
    |||||| ||||| ||| || |||| ||| ||||||||||||||||| ||||||||| |||||||||||| || ||||||||||||| |||||||| || |    
T  12035709 aaatcgagtatcatccacgtgcaattgctgagactaatccctcgagcattgtgggacccaaatgggcggcagactctccctaagagtttttaacaatgtt 12035610  T
Q  240 gcatgcccaaggctgaattcgaacc 264  Q
    ||||||| ||||||| |||||||||    
T  12035609 gcatgccaaaggctggattcgaacc 12035585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 15642614 - 15642526
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttt 229  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||| |  ||||||||||||||||    
T  15642614 aaatcgggtatcctccgcgcgcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 147 - 310
Target Start/End: Complemental strand, 32534235 - 32534073
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcc 246  Q
    ||||||||| |||||||| |||||||||||| | |||||| |||||| || || ||||||||||| |||||| ||||||||||||||  || |||||||     
T  32534235 ggtatcctctgcgcgcaattgcggagactaacctctcgagcattgtgaga-cctaatgggcggtaagctctctctaagagttttaacgttgttgcatgct 32534137  T
Q  247 caaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    ||| |||||||| ||| | | ||||||  ||||||||||||| ||| || |||| |||||||||    
T  32534136 caaagctgaatttgaatccaaaaccttggttaagctagaagaaacccgtgtcatatcatctaaa 32534073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 161 - 309
Target Start/End: Complemental strand, 10841157 - 10841008
Alignment:
Q  161 gcaactgcggagactaatccctcgagtattgtgggatcc-aaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 259  Q
    ||||||||||| | ||||||||| || ||||||||| || ||||||| || | | ||||||||||| |||||||  || | ||||||||||||||||||     
T  10841157 gcaactgcggaaattaatccctcaagcattgtgggaccctaaatgggaggcaagttctccctaagaattttaacgttgttacatgcccaaggctgaattt 10841058  T
Q  260 gaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||| | || |||  ||||| ||||||||||||||||||||||||||||    
T  10841057 gaacccaaaatcttggttaagatagaagagacctgtttcatctcatctaa 10841008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 169 - 309
Target Start/End: Complemental strand, 24801512 - 24801372
Alignment:
Q  169 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctaga 268  Q
    ||||||||||| || |||| ||||||||  ||||||| |||||  ||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||     
T  24801512 ggagactaatctcttgagtcttgtgggactcaaatggacggtaaactctccctaagagttttaacagtgctgcatgcctaaggctggattcgaaccaagg 24801413  T
Q  269 accttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    || ||| |||| ||| |||| | | || |||||||||||||    
T  24801412 actttagttaatctataagaaatccgtgtcatctcatctaa 24801372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 141 - 286
Target Start/End: Complemental strand, 46864250 - 46864105
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||| ||||||||  |||||||||||| ||||||||||||||||  ||||||  | |||||||| ||| | | ||||||||||| ||||||| || |||    
T  46864250 aaatcaggtatcctttgcgcgcaactgcagagactaatccctcgaacattgtgaaacccaaatggacggcaagttctccctaagaattttaacgctactg 46864151  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaa 286  Q
    ||||||||| |||| ||| ||||| | ||| || ||||||||||||    
T  46864150 catgcccaaagctggatttgaacccaaaactttgattaagctagaa 46864105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 150 - 273
Target Start/End: Original strand, 39547355 - 39547478
Alignment:
Q  150 atcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaa 249  Q
    |||||| ||||||||||||||||| |||||| ||||  |||||| || | |||| ||||| || ||| ||||||||||||| |||||||||||||| |||    
T  39547355 atcctctgcgcgcaactgcggagattaatccgtcgaacattgtgagacctaaataggcggcagactccccctaagagttttgacactgctgcatgctcaa 39547454  T
Q  250 ggctgaattcgaacctagaacctt 273  Q
    | ||| ||||||||| | ||||||    
T  39547455 gactggattcgaacccataacctt 39547478  T

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Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 310
Target Start/End: Original strand, 31733685 - 31733842
Alignment:
Q  153 ctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggc 252  Q
    ||||||||||||||| |||||||||| | || ||| |||||  | ||| |||| ||  |  |||||||||||||||||||| |||||||||||| || ||    
T  31733685 ctccgcgcgcaactgtggagactaattcatccagtcttgtgacacccagatggacgacaaactctccctaagagttttaactctgctgcatgcctaatgc 31733784  T
Q  253 tgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |||||||||||| | ||| ||  ||||| ||||||| || ||| | ||||||||||||    
T  31733785 tgaattcgaacccaaaacattggttaagttagaagaaacatgtgtgatctcatctaaa 31733842  T

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Target: chr1; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 10367663 - 10367575
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttt 229  Q
    ||||||||||| || ||| |||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||| |||||| |||||||||    
T  10367663 aaatcgggtattcttcgcacgcaactgcggagattaatccttcgagcattgttggacccaaatgggcggtagactctccttaagagttt 10367575  T

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Target: chr1; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 141 - 309
Target Start/End: Complemental strand, 10750756 - 10750589
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||| ||||||||| |||||||||||   |||||||||||||||  |||||| ||||||||||||||| | || |  ||||||||||||||| ||| ||    
T  10750756 aaatcaggtatcctctgcgcgcaactgtaaagactaatccctcgaacattgtgcgatccaaatgggcggcaagcgc-acctaagagttttaacgctgatg 10750658  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
     |||||||||  |  ||||||||| |  |||||  ||||  ||||| |||| |||||||||||||||||    
T  10750657 tatgcccaagattagattcgaacccaagaccttggttaaattagaaaagacatgtttcatctcatctaa 10750589  T

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Target: chr1; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 162 - 310
Target Start/End: Original strand, 25655267 - 25655415
Alignment:
Q  162 caactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcga 261  Q
    ||||||| |||||||||| ||  || |||||| |||  |||||| ||| |  ||||| ||||||||||||||  |||||||||||||| | | |||||||    
T  25655267 caactgcagagactaatctctttagcattgtgtgatttaaatggacggcaaactctctctaagagttttaacgttgctgcatgcccaatgttaaattcga 25655366  T
Q  262 acctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    ||| |||||||| |||||| ||||||| |  |||| |||||||||||||    
T  25655367 acccagaaccttgattaagttagaagatatttgttccatctcatctaaa 25655415  T

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Target: chr1; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 28506369 - 28506279
Alignment:
Q  220 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |||||||||| |||||||||||||| |||| | | |||||||| | ||||||||| |||| ||||||||||||||| |||| |||||||||    
T  28506369 ctaagagtttcaacactgctgcatgtccaaagttaaattcgaatccagaaccttagttaaactagaagagacctgtgtcatttcatctaaa 28506279  T

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Target: chr1; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 44913262 - 44913180
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttt 229  Q
    ||||||||| ||||| |||||| |||||||||| |||||| ||||||||| ||| |||||||| | |||||||||||||||||    
T  44913262 ggtatcctctgcgcgtaactgcagagactaatctctcgagcattgtgggacccagatgggcggcaagctctccctaagagttt 44913180  T

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Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 310
Target Start/End: Complemental strand, 36982441 - 36982345
Alignment:
Q  214 ctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    ||||||||||||||||||||  || |||||| | |||||||||||||||||    |||||  |||| ||||||||||||||| ||||||||||||||    
T  36982441 ctctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaagagacctgtgtcatctcatctaaa 36982345  T

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Target: chr1; HSP #24
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 40019327 - 40019232
Alignment:
Q  214 ctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||||| ||||||||||||  ||||||||  ||||||||||||||||||| | |||||| |||||| ||||||||||  || |||| ||||||||    
T  40019327 ctctccccaagagttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagttagaagagactcgtatcatttcatctaa 40019232  T

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Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 29124825 - 29124735
Alignment:
Q  220 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |||||||||||||| ||||||||||||||| |||| ||||||||  |  ||| |  ||||||||||||||||  |||||||||||||||||    
T  29124825 ctaagagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagactcgtttcatctcatctaaa 29124735  T

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Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 32883561 - 32883622
Alignment:
Q  173 actaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaaca 234  Q
    ||||||||||||||| ||||||| ||||||||||||| |  |||||||||||||||||||||    
T  32883561 actaatccctcgagtcttgtggggtccaaatgggcggcaaactctccctaagagttttaaca 32883622  T

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Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 17600561 - 17600649
Alignment:
Q  222 aagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    ||||||||||||  || ||||||| ||||||||||||| |||| |  |||||  ||||||||||||||||| || ||||||||||||||    
T  17600561 aagagttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctcatctaaa 17600649  T

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Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 49071736 - 49071673
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatg 204  Q
    ||||||| |||| ||||| |||||||||||||||||||| |||||| ||||||||| |||||||    
T  49071736 aaatcggatatcttccgcacgcaactgcggagactaatctctcgagcattgtgggacccaaatg 49071673  T

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Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 32883625 - 32883699
Alignment:
Q  214 ctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaaga 288  Q
    |||||||||||||||||||| |||||||||| |||| |||| ||||||||| | || |||  |||||||||||||    
T  32883625 ctctccctaagagttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaaga 32883699  T

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Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 286
Target Start/End: Original strand, 36522259 - 36522363
Alignment:
Q  182 tcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagc 281  Q
    ||||| |||||||||  ||||||| ||| |  ||||||||||||||||||||  ||||||||| | ||| ||| |||||||| |||||  ||| ||||||    
T  36522259 tcgagcattgtgggactcaaatggacggcaaactctccctaagagttttaaccttgctgcatgtctaagactgtattcgaacttagaaatttagttaagc 36522358  T
Q  282 tagaa 286  Q
    |||||    
T  36522359 tagaa 36522363  T

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Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 21774668 - 21774595
Alignment:
Q  235 ctgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||| ||||| ||| ||||||||| | |||||| ||||||||||||||||| || | ||||||||||||    
T  21774668 ctgctgcatgtccaagactggattcgaacccaaaaccttgattaagctagaagagacatg-tgcatctcatctaa 21774595  T

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Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 16552581 - 16552484
Alignment:
Q  220 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaatgttctt 317  Q
    |||||||||||||| | |||| ||| |||| | |||||| ||| | | || ||| ||||||||| |||||| |||| ||||||||||||| |||||||    
T  16552581 ctaagagttttaacgcagctgtatgtccaatgttgaatttgaatccataatcttgattaagctataagagatctgtgtcatctcatctaagtgttctt 16552484  T

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Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 2044556 - 2044472
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaaga 225  Q
    ||||||||||| |||  |||| |||||| |||||||||| || ||| ||||||| | |||||| |||||||  ||||||||||||    
T  2044556 aaatcgggtattctctacgcgaaactgcagagactaatctcttgagcattgtggaacccaaataggcggtaatctctccctaaga 2044472  T

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Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 311
Target Start/End: Original strand, 35540036 - 35540132
Alignment:
Q  215 tctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaat 311  Q
    |||| ||||||||||||||  || ||||||| |||||||||||||  ||  |||||||| ||||||||| |||| |  | |||||||||||| ||||    
T  35540036 tctctctaagagttttaacgttgttgcatgcacaaggctgaattcagactcagaaccttgattaagctaaaagaaatttatttcatctcatccaaat 35540132  T

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Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 28286442 - 28286509
Alignment:
Q  168 cggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacac 235  Q
    ||||||||||| | ||| ||||||||||||  |||||||||| || |||||||||| | |||||||||    
T  28286442 cggagactaattcatcgggtattgtgggatttaaatgggcggcagactctccctaaaaattttaacac 28286509  T

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Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 17888819 - 17888729
Alignment:
Q  227 ttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaatgttctt 317  Q
    ||||||| ||| |||||||| |||| |  || |||||| | || |||| |||||||||||||||| ||  |||||||||||||| ||||||    
T  17888819 ttttaacgctgttgcatgcctaaggttagatccgaacccaaaatcttagttaagctagaagagacatgcgtcatctcatctaaacgttctt 17888729  T

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Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 9639557 - 9639630
Alignment:
Q  159 gcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaa 232  Q
    |||||| |||||||||||||| ||||||| || | ||| ||||||||||||||   | |||| |||||||||||    
T  9639557 gcgcaattgcggagactaatctctcgagtcttttaggacccaaatgggcggtatattttcccaaagagttttaa 9639630  T

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Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 310
Target Start/End: Complemental strand, 13546537 - 13546416
Alignment:
Q  189 ttgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaaga 288  Q
    ||||||||| |||||||||||||  |||||| |||||||||||||| || | ||||   ||| ||| ||||||||| |  || ||| ||||| |||||||    
T  13546537 ttgtgggattcaaatgggcggtaaactctccataagagttttaacattgttacatgtataagactggattcgaacccacgactttagttaagttagaaga 13546438  T
Q  289 gacctgtttcatctcatctaaa 310  Q
    ||  ||  || |||||||||||    
T  13546437 gatatgcgtcgtctcatctaaa 13546416  T

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Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 33721079 - 33721007
Alignment:
Q  161 gcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaac 233  Q
    |||| |||| ||||||||| |||||   ||||||||||||||||| ||| |  ||||||||||||| ||||||    
T  33721079 gcaattgcgaagactaatctctcgaaccttgtgggatccaaatggacggcaaactctccctaagagatttaac 33721007  T

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Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 149 - 309
Target Start/End: Original strand, 30995955 - 30996115
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccca 248  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||| || |||||||||||||||||||| ||| ||||||||||    
T  30995955 tatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgttgcatgccca 30996054  T
Q  249 aggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||  | ||||||||| || |||||  ||||| ||||||||||| ||| ||||||||||||    
T  30996055 aggtcggattcgaacccaggaccttggttaagatagaagagacccgttccatctcatctaa 30996115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 145 - 309
Target Start/End: Complemental strand, 25224854 - 25224690
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    ||||||||||||||| |||||||||||||||||||||| ||| ||||||||| | |||||||||| | | ||||| ||||||||||||| |||||||||     
T  25224854 cgggtatcctccgcgtgcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctccttaagagttttaacgctgctgcatt 25224755  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||  ||  ||||||||| || |||||  ||||||||||||||||| ||||||||||||||||    
T  25224754 cccaaaacttgattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaa 25224690  T

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Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 141 - 309
Target Start/End: Original strand, 48204293 - 48204461
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| | |||||||| ||  | |||||||||||| ||||||||  |||||    
T  48204293 aaatcgggtatcctccgcgcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaacgttgctg 48204392  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||||||| ||||||||| |  |||||  ||||||||||||||||  ||| ||||||||||||    
T  48204393 catgcccaaggctggattcgaacccaagaccttggttaagctagaagagactcgttccatctcatctaa 48204461  T

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Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 149 - 309
Target Start/End: Complemental strand, 27763872 - 27763714
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccca 248  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||  ||||||| ||| || |||||||||||||||||||||||| || |||||||    
T  27763872 tatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgttgtatgccca 27763773  T
Q  249 aggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||| ||||||||| || |||||  |||||||||  |||||| |||  |||||||||||    
T  27763772 aggctggattcgaacccaggaccttggttaagctag--gagacccgttctatctcatctaa 27763714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 20861402 - 20861289
Alignment:
Q  146 gggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgc 245  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||| ||| | |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  20861402 gggtatcctccgcgcacaactgcggagactaatccctcgagcattatggaacccaaatgggcggcaggctctccctaagagttttaacgctgctgcatgc 20861303  T
Q  246 ccaaggctgaattc 259  Q
    |||| |||| ||||    
T  20861302 ccaatgctggattc 20861289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 141 - 310
Target Start/End: Complemental strand, 40294771 - 40294602
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||||||||||||  | |||||||||||||||||||||| |||||||||||||||| |||||| |||| | ||| |||||||||||||||||| || ||    
T  40294771 aaatcgggtatcctttgtgcgcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccctaagagttttaacattgttg 40294672  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |||  ||||||||| ||||||||  || ||||| |||||| |||| |||||  || ||||||||||||||    
T  40294671 catatccaaggctggattcgaactcaggaccttgattaaggtagaggagactcgtgtcatctcatctaaa 40294602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 1642765 - 1642644
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||| |||||||||| ||||||||||| ||||    
T  1642765 aaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaacacggctg 1642666  T
Q  241 catgcccaaggctgaattcgaa 262  Q
    ||||  |||||||  |||||||    
T  1642665 catgttcaaggctagattcgaa 1642644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 141 - 309
Target Start/End: Complemental strand, 38331287 - 38331119
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |  ||||||||| |||||||||||| | |||||| |||||||||||||| ||||||    
T  38331287 aaatcgggtatcctccgcgtgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaacgctgctg 38331188  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||| ||| | || |||| |||  || || ||  ||||| ||||||||||| | | ||||||||||||    
T  38331187 catgctcaaagttggattcaaactcaggacattggttaagttagaagagacccgatccatctcatctaa 38331119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 142 - 292
Target Start/End: Original strand, 48210943 - 48211093
Alignment:
Q  142 aatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgc 241  Q
    ||||||||||| |||||| |||||||||||||  ||| ||||||||||||||||| | |||| | ||| | ||||||| |||||||||||||  ||||||    
T  48210943 aatcgggtatcttccgcgtgcaactgcggagatcaattcctcgagtattgtgggacctaaatagacggcaagctctccataagagttttaacgttgctgc 48211042  T
Q  242 atgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacc 292  Q
    |||| |||||||| ||||||||| | |||||| |||||| |||||||||||    
T  48211043 atgctcaaggctggattcgaaccaaaaaccttgattaagttagaagagacc 48211093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 141 - 263
Target Start/End: Complemental strand, 55123256 - 55123134
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| |||||| || |||||||||  | | ||||||||||||| ||||||| ||||||    
T  55123256 aaatcaggtatcctccgcgcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgggtagcaagctctccctaagaattttaacgctgctg 55123157  T
Q  241 catgcccaaggctgaattcgaac 263  Q
    |||  ||||||||| ||||||||    
T  55123156 catttccaaggctggattcgaac 55123134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 163 - 309
Target Start/End: Complemental strand, 14352694 - 14352545
Alignment:
Q  163 aactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgc----ccaaggctgaatt 258  Q
    ||||||||||||||||||||||||||||| || |||||||||| ||  | ||||||| |||||||||||||||||||||||||    ||||||||| |||    
T  14352694 aactgcggagactaatccctcgagtattg-ggtatccaaatggacgacaagctctccgtaagagttttaacactgctgcatgcatgtccaaggctggatt 14352596  T
Q  259 cgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||| |  | |||  |||||||||||||||| |||| ||||||||||||    
T  14352595 cgaaccgaatatcttggttaagctagaagagacttgttccatctcatctaa 14352545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 198 - 309
Target Start/End: Complemental strand, 38088737 - 38088626
Alignment:
Q  198 ccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgttt 297  Q
    |||||| ||||| | | ||||||||||||||||||| || |||||||||||| |||| |||||||||| |||||||  ||||||||||||||||| ||||    
T  38088737 ccaaataggcggcaagttctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagacccgttt 38088638  T
Q  298 catctcatctaa 309  Q
    ||||||||||||    
T  38088637 catctcatctaa 38088626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 8757499 - 8757435
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcgg 209  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  8757499 cgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaataggcgg 8757435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 263
Target Start/End: Complemental strand, 22288390 - 22288272
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    |||||||||||||||| ||||||| ||||||||| ||| ||||||||||  |  ||||||| ||  | | |||||||||||||||||||| || ||||||    
T  22288390 cgggtatcctccgcgcacaactgcagagactaattccttgagtattgtgtaactcaaatggacgacaagttctccctaagagttttaacattgttgcatg 22288291  T
Q  245 cccaaggctgaattcgaac 263  Q
      |||||||||||||||||    
T  22288290 ttcaaggctgaattcgaac 22288272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 310
Target Start/End: Complemental strand, 15283230 - 15283065
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||||||| ||||||| | |||| |  | ||||||||| |||||| ||||||||| |||||||||||| |  || ||| |||||||||||| | |||||    
T  15283230 aaatcgggtctcctccgtgggcaattatgaagactaatctctcgagcattgtgggacccaaatgggcggcaatctttccataagagttttaaga-tgctg 15283132  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |||||||| | ||| |||||||||    |||||| ||||| ||||||||||  || ||||||||||||||    
T  15283131 catgcccatgactggattcgaacc---caccttagttaagttagaagagactcgtatcatctcatctaaa 15283065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 249
Target Start/End: Complemental strand, 39950371 - 39950263
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||| |||||||||||||  |||||||||||||||||||| ||||| ||||| |||||||||||  ||  ||  ||||||||| | ||||||| ||||||    
T  39950371 aaattgggtatcctccgcatgcaactgcggagactaatccttcgagcattgtcggatccaaatgaacgacagattctccctaaaaattttaacgctgctg 39950272  T
Q  241 catgcccaa 249  Q
    |||| ||||    
T  39950271 catgtccaa 39950263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 141 - 264
Target Start/End: Complemental strand, 11767269 - 11767146
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||||||||||||| |||| || |||| |||||||||| || | ||||||||||  ||||||||||| | || ||  ||||||||||||| | || ||    
T  11767269 aaatcgggtatcctccacgcgtaattgcgaagactaatccttcaaatattgtgggactcaaatgggcggcaagcacttgctaagagttttaatattgttg 11767170  T
Q  241 catgcccaaggctgaattcgaacc 264  Q
    ||||||||||| |  |||||||||    
T  11767169 catgcccaaggatagattcgaacc 11767146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 25739243 - 25739155
Alignment:
Q  145 cgggtatcctccgcgcgcaact-gcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaa 232  Q
    |||||||||||||| ||||||| ||||||||||||   |||||| || ||||| |||||||||||| |  |||||||||||||||||||    
T  25739243 cgggtatcctccgcacgcaacttgcggagactaatttatcgagtcttatgggacccaaatgggcggaaaactctccctaagagttttaa 25739155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 40318435 - 40318475
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcga 185  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40318435 cgggtatcctccgcgcgcaactgcggagactaatccctcga 40318475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 43621294 - 43621402
Alignment:
Q  142 aatcgggtatcctccgcgcgcaactgcggagactaatccctcgagta-ttgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    |||||||||||||| |||||||||| | ||||||||||||||||| | ||||| ||   ||||||| || | ||||||||||| |||||||||  |||||    
T  43621294 aatcgggtatcctctgcgcgcaactacagagactaatccctcgagcatttgtgagacttaaatgggaggcaagctctccctaaaagttttaacgttgctg 43621393  T
Q  241 catgcccaa 249  Q
    ||| |||||    
T  43621394 catacccaa 43621402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 44941255 - 44941314
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcgg 209  Q
    |||||||||||||||||||||||||||||| ||||||| ||  ||||||||||||||||||    
T  44941255 tatcctccgcgcgcaactgcggagactaat-cctcgagcataatgggatccaaatgggcgg 44941314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 309
Target Start/End: Complemental strand, 42514693 - 42514595
Alignment:
Q  213 gctctccctaagagttttaacac--tgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    ||||||||||||||||||||| |  || ||||||||||| | || ||||||||| |  || ||| ||||||||||||||||  ||||||||||||||||    
T  42514693 gctctccctaagagttttaacgcgctgatgcatgcccaaagttggattcgaacccaagactttagttaagctagaagagacacgtttcatctcatctaa 42514595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 22755725 - 22755652
Alignment:
Q  219 cctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacc 292  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||| || ||  |||| |||||| |||||    
T  22755725 cctaagagttttaatgctgctgcatgcccaaggctggattcgaacctagtactttggttaacctagaatagacc 22755652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 15446127 - 15446019
Alignment:
Q  169 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgc----atgcccaaggctgaattcgaacc 264  Q
    |||||||||||| ||||| |||||| || |||||||| ||| |  |||||| || || | |||||||||||||    ||||||||||||| |||||||||    
T  15446127 ggagactaatccgtcgagcattgtgagacccaaatggacggcaaactctccatacgaatattaacactgctgcacgaatgcccaaggctggattcgaacc 15446028  T
Q  265 tagaacctt 273  Q
    || ||||||    
T  15446027 taaaacctt 15446019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 21223465 - 21223553
Alignment:
Q  170 gagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaatt 258  Q
    |||||||||  || ||| ||||||||||| |||| ||||  | ||||||||||| | |||||||||| ||||||| | ||| |||||||    
T  21223465 gagactaatttcttgagcattgtgggatctaaataggcgacaagctctccctaaaaattttaacactactgcatgtctaagactgaatt 21223553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 54877913 - 54877841
Alignment:
Q  220 ctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacc 292  Q
    ||||||||||||||  || || |||||||||||||||||| |||  | ||||||  ||||| |||||||||||    
T  54877913 ctaagagttttaacgttgttggatgcccaaggctgaattcaaactcaaaaccttggttaagttagaagagacc 54877841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 145 - 309
Target Start/End: Complemental strand, 12411303 - 12411139
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    ||||||||| ||||||||||||| ||||||||||||||| || |||||||||   |||||||||| || |||| ||||||||||||||| ||||||||||    
T  12411303 cgggtatcccccgcgcgcaactgtggagactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaacgctgctgcatg 12411204  T
Q  245 cccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||| ||||||||  || |||||  ||||| ||||||||||||||| ||||||||||||    
T  12411203 cccaaggctggattcgaactcaggaccttggttaagttagaagagacctgttccatctcatctaa 12411139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 147 - 310
Target Start/End: Complemental strand, 21910357 - 21910195
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcc 246  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| | ||||| |||| || ||||| ||||||||||||||  || ||||||||    
T  21910357 ggtatcctccgcgtgcaactgcggagactaatccct-gagtattgtgggacctaaatgagcggcagactctctctaagagttttaacgatgttgcatgcc 21910259  T
Q  247 caaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |||||||| ||||||||| || | |||  |||||||||||||||| ||||||||||||||||||    
T  21910258 caaggctggattcgaacccaggatcttggttaagctagaagagacttgtttcatctcatctaaa 21910195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 145 - 269
Target Start/End: Original strand, 12836883 - 12837007
Alignment:
Q  145 cgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatg 244  Q
    ||||||||||||||||||||||| ||||||||||||||| || ||||||||| ||||||||||||   ||||||||||||||||||||| ||||||||||    
T  12836883 cgggtatcctccgcgcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacgctgctgcatg 12836982  T
Q  245 cccaaggctgaattcgaacctagaa 269  Q
    || ||||||| ||||||||| ||||    
T  12836983 cctaaggctggattcgaacccagaa 12837007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 141 - 309
Target Start/End: Complemental strand, 31412281 - 31412114
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||||| ||||||||| ||||||||| ||||||||||  |||||| ||||||| | |||||||||||| || |||||||||||||||||||||||||||    
T  31412281 aaatcggatatcctccgtgcgcaactgtggagactaatttctcgagcattgtggaacccaaatgggcggcagactctccctaagagttttaacactgctg 31412182  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    || |||||| ||||||||||| || |  |||||| |||| |||  ||||||| ||| ||||||||||||    
T  31412181 cacgcccaaagctgaattcgatcc-atgaccttagttaaactatgagagacccgttccatctcatctaa 31412114  T

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Target: chr6; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 147 - 310
Target Start/End: Original strand, 31107481 - 31107644
Alignment:
Q  147 ggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcc 246  Q
    ||||||||| |||||||| | | |||||||||| ||||| ||||||||||  ||||||| ||||| |||||||| |||||||||||| ||| |||||| |    
T  31107481 ggtatcctctgcgcgcaattacagagactaatctctcgaatattgtgggaatcaaatggacggtaagctctcccaaagagttttaacgctgttgcatgtc 31107580  T
Q  247 caaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    ||| |||| ||||||||  ||||||||| ||||| |||||||||||  ||||||||||||||||    
T  31107581 caatgctggattcgaactcagaaccttagttaagttagaagagacccatttcatctcatctaaa 31107644  T

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Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 146 - 292
Target Start/End: Complemental strand, 28099397 - 28099251
Alignment:
Q  146 gggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgc 245  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||| ||| |  ||||||| ||  |   ||||||||| |||||||||||||||||||||    
T  28099397 gggtatcctccgctcgcaactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactgctgcatgc 28099298  T
Q  246 ccaaggctgaattcgaacctagaaccttaattaagctagaagagacc 292  Q
    ||||||||| ||||||||| || |||||| ||||| |||||||||||    
T  28099297 ccaaggctggattcgaacccaggaccttagttaaggtagaagagacc 28099251  T

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Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 173 - 309
Target Start/End: Complemental strand, 423782 - 423646
Alignment:
Q  173 actaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaacct 272  Q
    |||||||||||||| |||||||||  ||||||| ||| ||  | || |||||||||||||| |||| ||||||||||||||| |||| |||| | |||||    
T  423782 actaatccctcgagcattgtgggactcaaatggacggcagtttatctctaagagttttaacgctgcagcatgcccaaggctggattcaaacccaaaacct 423683  T
Q  273 taattaagctagaagagacctgtttcatctcatctaa 309  Q
    |  |||| |||||||||| ||||| ||||||||||||    
T  423682 tggttaaactagaagagatctgttccatctcatctaa 423646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 25084121 - 25084017
Alignment:
Q  213 gctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaatg 312  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||||||  |  || || ||||||||||||||||| ||| ||||||||||||| ||    
T  25084121 gctctccctaagagttttaacattgctgcatgtccaagactgaattcgaactcaagactttgattaagctagaagagacttgtgtcatctcatctaagtg 25084022  T
Q  313 ttctt 317  Q
    |||||    
T  25084021 ttctt 25084017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 9536918 - 9536844
Alignment:
Q  149 tatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaa 223  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||    
T  9536918 tatcctccgagcgcaactgcggagactaatccctcgagcattgtggaatctaaatggacggtaggctctccctaa 9536844  T

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Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 310
Target Start/End: Complemental strand, 278550 - 278382
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctg 240  Q
    ||||||||||||||||| | ||||||| |  ||||||||||| |||| |||||||| | |||||| ||| |  |||||| ||||||||||||   || ||    
T  278550 aaatcgggtatcctccgtgtgcaactgtgacgactaatcccttgagttttgtgggacctaaatggacggcaaactctccataagagttttaa-tgtgttg 278452  T
Q  241 catgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    ||||||||| |||| |||| |||  |  |||||| ||||||||||||||||  || ||||||||||||||    
T  278451 catgcccaaagctggattcaaactcaagaccttagttaagctagaagagactcgtgtcatctcatctaaa 278382  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 310
Target Start/End: Original strand, 21028982 - 21029134
Alignment:
Q  162 caactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactg------ctgcatgcccaaggctga 255  Q
    ||||||||||||||||||||| |||  |||||| | |||||||||||| |  ||||  |||||||||||||| |||      |||||||||||||||||     
T  21028982 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactct--ctaagagttttaacgctgctgcatctgcatgcccaaggctgg 21029079  T
Q  256 attcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    ||||||||| |  |||||  ||||||||||||||||| ||  |||||||| ||||    
T  21029080 attcgaacccaagaccttggttaagctagaagagacccgtgccatctcatataaa 21029134  T

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Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 17177290 - 17177189
Alignment:
Q  148 gtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgccc 247  Q
    ||||||||||||| ||| | |||||| ||||||||||||||||||| ||||||||| | | | |  || ||| ||||||||||||  |||||||||||||    
T  17177290 gtatcctccgcgcacaattacggagattaatccctcgagtattgtgagatccaaatagacagaaaactttccttaagagttttaaagctgctgcatgccc 17177191  T
Q  248 aa 249  Q
    ||    
T  17177190 aa 17177189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 302
Target Start/End: Complemental strand, 5944962 - 5944840
Alignment:
Q  180 cctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaa 279  Q
    ||||||||||||| ||||| |||||||||| |  |||||||||| |||||||||| || | |||| | ||| ||||||||||||  || |||||  ||||    
T  5944962 cctcgagtattgtaggatctaaatgggcggcaaactctccctaaaagttttaacaatgttacatgtcaaagactgaattcgaactcaggaccttggttaa 5944863  T
Q  280 gctagaagagacctgtttcatct 302  Q
    | || |||||||| || ||||||    
T  5944862 gttaaaagagacccgtatcatct 5944840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 1534409 - 1534320
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaa 232  Q
    ||||||| ||||||||||||  |||||||||||  ||| ||||||| |||||| ||  ||||||||||  | ||||||||||||||||||||    
T  1534409 aaatcggatatcctccgcgc--aactgcggagatcaattcctcgagcattgtgcgactcaaatgggcgacaagctctccctaagagttttaa 1534320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 8507135 - 8507194
Alignment:
Q  251 gctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaa 310  Q
    |||||||||||||| | ||||||||||||||||||||| | | || ||||||||||||||    
T  8507135 gctgaattcgaacccaaaaccttaattaagctagaagaaatcggtgtcatctcatctaaa 8507194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 305
Target Start/End: Original strand, 15614560 - 15614719
Alignment:
Q  146 gggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgc 245  Q
    ||||||||||| | |||||||| | |||||||| ||| ||| |||||||||  ||||| || |||| | ||| || || |||||||||  |||| ||||     
T  15614560 gggtatcctccacacgcaactgtgaagactaattcctagagcattgtgggactcaaataggtggtaagttcttccgaaaagttttaacgttgctacatgt 15614659  T
Q  246 ccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcat 305  Q
    ||||| ||||||||||||| |  || ||  ||||| ||||||||||  ||| ||||||||    
T  15614660 ccaagactgaattcgaacccatgacattggttaagttagaagagactcgttccatctcat 15614719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 29185378 - 29185307
Alignment:
Q  215 tctccctaagagttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaa 286  Q
    |||||||||||||||||||  || |||||| | || |||| ||||||||||||||||||| |||| ||||||    
T  29185378 tctccctaagagttttaacgttgatgcatgtctaatgctggattcgaacctagaaccttagttaaactagaa 29185307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 21028845 - 21028924
Alignment:
Q  162 caactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcat 243  Q
    ||||||||||||||||||||| |||  |||||| | |||||||||||| |  ||||  |||||||||||||| |||||||||    
T  21028845 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactct--ctaagagttttaacgctgctgcat 21028924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 28933277 - 28933179
Alignment:
Q  161 gcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattc 259  Q
    ||||||||||| |||| || |||||| ||||||| | |||||||||||| |  ||||| |||||| |||||||  || |||||| | ||||||||||||    
T  28933277 gcaactgcggatactattcactcgagcattgtggaacccaaatgggcggcaaactctctctaagaattttaacgatgttgcatgtctaaggctgaattc 28933179  T

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Target: scaffold0009 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 27212 - 27296
Alignment:
Q  146 gggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagtttt 230  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||||||||| | ||||||||||||||||||    
T  27212 gggtatcctccgcgcgcaactgcgaagactaatccctcgagcatcgtgagatccaaatgggcggcaagctctccctaagagtttt 27296  T

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Target: scaffold0009; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 32330 - 32417
Alignment:
Q  225 agttttaacactgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaaatg 312  Q
    ||||||||| ||||||||| ||||||  || ||||||||| ||||||||  | ||||||||||||||| ||| ||||| |||||||||    
T  32330 agttttaacgctgctgcatacccaagattggattcgaacccagaaccttggtgaagctagaagagacccgttccatcttatctaaatg 32417  T

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Target: scaffold0013 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 29134 - 29197
Alignment:
Q  141 aaatcgggtatcctccgcgcgcaactgcggagactaatccctcgagtattgtgggatccaaatg 204  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| |||||||    
T  29134 aaatcgggtatcctccgcgcgcaactgtggagactaatcccacgagcattgtgggacccaaatg 29197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 167918 - 167846
Alignment:
Q  235 ctgctgcatgcccaaggctgaattcgaacctagaaccttaattaagctagaagagacctgtttcatctcatctaa 309  Q
    |||||||||||||||||||| ||| |||||    ||||| |||||||||||||||||| ||||||||||||||||    
T  167918 ctgctgcatgcccaaggctggatttgaacccg--accttgattaagctagaagagacccgtttcatctcatctaa 167846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 16065 - 16173
Alignment:
Q  169 ggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgc----atgcccaaggctgaattcgaacc 264  Q
    |||||||||||| ||||| |||||| || |||||||| ||| |  |||||| || || | |||||||||||||    ||||||||||||| |||||||||    
T  16065 ggagactaatccgtcgagcattgtgagacccaaatggacggcaaactctccatacgaatattaacactgctgcacgaatgcccaaggctggattcgaacc 16164  T
Q  265 tagaacctt 273  Q
    || ||||||    
T  16165 taaaacctt 16173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 279
Target Start/End: Complemental strand, 11089 - 10973
Alignment:
Q  163 aactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaacactgctgcatgcccaaggctgaattcgaa 262  Q
    ||||| ||||| |||||  |||||| |||||  | | |||||||||| |  |||||| |||||||||||||| || |||||||||||   || |||||||    
T  11089 aactgtggagattaatctatcgagttttgtgaaacctaaatgggcggcaaactctccgtaagagttttaacattgttgcatgcccaaaaatggattcgaa 10990  T
Q  263 cctagaaccttaattaa 279  Q
    ||||| |||||| ||||    
T  10989 cctaggaccttagttaa 10973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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