View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21562_low_11 (Length: 515)
Name: NF21562_low_11
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Original strand, 8460368 - 8460853
Alignment:
| Q |
19 |
ctaactaattacactcttaatcaaacagagtataattatgattataaaatgttgatctgcatctacttttgattactgcaggggtatgcatacatattga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8460368 |
ctaactaattacactcttaatcaaacagagtataattatgattataaaatgttgatctgcatctacttttgattactgcaggggtatgcatacatattga |
8460467 |
T |
|
| Q |
119 |
ctcatcctgggacaccaacaattttctatgaccacttttatgattggaataactcatttcatgagcagattgtgaagttggtacgtaaattactggtgtc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8460468 |
ctcatcctgggacaccaacaattttctatgaccacttttatgattggaataactcatttcatgagcagattgtgaagttggtacgtaaaatactggtgtc |
8460567 |
T |
|
| Q |
219 |
atttgttcatnnnnnnncatactagtattatgccgcattttcttttgacaaaaagaacctagtataccaatctgcatttaactgcagattgacactcgca |
318 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8460568 |
atttgttcataaaaaaacatactagtattatgccgcattttcttttgacaaaaagaacctagtataccaatctgcatttaactgcagattgacactcgca |
8460667 |
T |
|
| Q |
319 |
agcgtcaaggtattcatagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattgg |
418 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8460668 |
agcgtcaagatattcatagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattgg |
8460767 |
T |
|
| Q |
419 |
agatggttcatggagcccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8460768 |
agatggttcatggagcccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaagtagtgttcat |
8460853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 409 - 504
Target Start/End: Original strand, 12950893 - 12950986
Alignment:
| Q |
409 |
tgaagattggagatggttcatggagcccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| | |||||||||||| |||||||||| |
|
|
| T |
12950893 |
tgaagattggagatggttcatggagcccatctgggagggaatggaca--ctcaaccagtggccataactaggttgtatggcacaagtagtgttcat |
12950986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 335 - 504
Target Start/End: Original strand, 12127294 - 12127461
Alignment:
| Q |
335 |
tagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
434 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12127294 |
tagcagatcaactattaggattctggaggctaagcagaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
12127393 |
T |
|
| Q |
435 |
ccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
504 |
Q |
| |
|
|||||| |||||||||||||| |||||| ||||| ||||||| | |||||||||||| |||||||||| |
|
|
| T |
12127394 |
ccatctaggagggaatggaca--ctcaaccagtggccataactaggttgtatggcacaagtagtgttcat |
12127461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 504
Target Start/End: Complemental strand, 32220353 - 32220285
Alignment:
| Q |
434 |
cccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
504 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| ||||||| | |||||||||||| |||||||||| |
|
|
| T |
32220353 |
cccatctgggagggaatggaca--ctcaaccagtggccataactaggttgtatggcacaagtagtgttcat |
32220285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 335 - 504
Target Start/End: Original strand, 23101499 - 23101666
Alignment:
| Q |
335 |
tagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
434 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23101499 |
tagcagatcaactattaggattctggaggccaagcagaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
23101598 |
T |
|
| Q |
435 |
ccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
504 |
Q |
| |
|
|||||| |||||||||||||| |||||| ||||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
23101599 |
ccatctaggagggaatggaca--ctcaacccgtggccataactagattgtatggcacaagtagtgttcat |
23101666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 354 - 504
Target Start/End: Complemental strand, 39618903 - 39618756
Alignment:
| Q |
354 |
attctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagcccatctgggagggaatgga |
453 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
39618903 |
attctggaggccaagcagaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcat-gagcccatctaggagggaatgga |
39618805 |
T |
|
| Q |
454 |
cactctcaacatgtggctataactatgctgtatggcacaattagtgttcat |
504 |
Q |
| |
|
|| |||||| |||| ||||||| | |||||||||||| |||||||||| |
|
|
| T |
39618804 |
ca--ctcaaccagtggtcataactaggttgtatggcacaagtagtgttcat |
39618756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University