View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_13 (Length: 486)
Name: NF21562_low_13
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 24 - 469
Target Start/End: Original strand, 4670879 - 4671325
Alignment:
| Q |
24 |
tttgtataaacaatagaagaaccacatttgatggaaatagataagagtggtatgtggttcttctattgtttataatcaagagactgttgttagacttagg |
123 |
Q |
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| T |
4670879 |
tttgtataaacaatagaagaaccacatttgatggaaatagataagagtggtatgtggttcttctattgtttataatcaagagactgttgttagacttagg |
4670978 |
T |
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| Q |
124 |
cccctacactgcatcatgaatctgatcattttgggttgcaaaatcaatcatacacagagaaacnnnnnnnnnnnnnnc-aacctcaatgaatttggtttc |
222 |
Q |
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| T |
4670979 |
cccctacactgcatcatgaatctgatcattttgggttgcaaaatcaatcatacacagagaaacaaaaagcaaaaaaaccaacctcaatgaatttggtttc |
4671078 |
T |
|
| Q |
223 |
tggcatattaatatagataagaaaatggattaaacctggtacaagaccaccaccaagcactctagaaacttcatttccaaaaggaccagacctgaaatca |
322 |
Q |
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| T |
4671079 |
tggcatattaatatagataagaaaatggattaaacctggtacaagaccaccaccaagcactctagaaacttcatttccaaaaggaccagacctgaaatca |
4671178 |
T |
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| Q |
323 |
aagccaaatacacagtataaaaataaaggcacgtatctactcagactagaagttcggaagatgctataaaacaccaatacagagaataatacatccttca |
422 |
Q |
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| T |
4671179 |
aagccatatacacagtataaaaataaaggcacgtatctacttagactagaagttcggaagatgctataaaacaccaatacagagaataatacatccttca |
4671278 |
T |
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| Q |
423 |
aatattaatccagatggtaatattctatttaacatgctaatgaagaa |
469 |
Q |
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| T |
4671279 |
aatattaatccagatggtaatattctatttaacatgctaatgaagaa |
4671325 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 43260264 - 43260201
Alignment:
| Q |
254 |
aaacctggtacaagaccaccaccaagcactctagaaacttcatttccaaaaggaccagacctga |
317 |
Q |
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| T |
43260264 |
aaacctggcacaagaccaccgccaagcacaatagaaacttcatctccaaaagggccagacctga |
43260201 |
T |
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