View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_14 (Length: 471)
Name: NF21562_low_14
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Original strand, 48979506 - 48979965
Alignment:
| Q |
8 |
agaaaataaagattattaatatgttgtacatcattaaaaagtaagataaatttaggcgatagtagattagtagtaatttacaaaatgannnnnnnnnacg |
107 |
Q |
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| T |
48979506 |
agaaaataaagattattaatatgctgtacatcattaaaaagtaagataaatttaggcgatagtagattagtagtaatttacaaaatgatttttttt-acg |
48979604 |
T |
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| Q |
108 |
aatataaaatgaaggttttctttaatttcatatacaacattgatagtgctagcacttacacttgggaaagtgtacatgttctaaaagatcatacacaaag |
207 |
Q |
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| T |
48979605 |
aatataaaatgaaggttttctttaatttcatatacaacattgatagtgctagcacttacacttgggaaagtgttcatgttctaaaagatcatacacaaag |
48979704 |
T |
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| Q |
208 |
tgacgcttcatgcatgaatcattatatctcacacgctgcaaattaaacaatgataag---------------------ctatttaaatacatactaatat |
286 |
Q |
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| T |
48979705 |
tgacgcttcatg----aatcattatatctcacacgctgcaaattaaacaatgataagaaatttcgcataaagaataaactatttaaatacatactaatat |
48979800 |
T |
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| Q |
287 |
tagagttagaaggtaataattatgaagatatagttgctggaggcgatgaagaggccccttcagtccaagacatgacagtgacgactggaatgcagctccc |
386 |
Q |
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| T |
48979801 |
tagagttagaaggtaataattatgaagatatagttgctggaggcgatgaagaggccccttcagtccaagacatgacagtgacgactggaatgcagctccc |
48979900 |
T |
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| Q |
387 |
gcatcgttggatcagaagcacacacgttgacactatgcatgttgtgagctattgaaccaacgagt |
451 |
Q |
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| T |
48979901 |
gcatcgttggatcagaagcacacacgttgacactatgcatgttgtgagctattgaaccaacgagt |
48979965 |
T |
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