View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_15 (Length: 470)
Name: NF21562_low_15
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 181 - 453
Target Start/End: Complemental strand, 33352680 - 33352419
Alignment:
| Q |
181 |
ttgatactctcgaaaaagattgactatggtaaaattattctttggaaaaataatgtaacaagaaatatgtgtgctcaatttatttgaagtcctctttagt |
280 |
Q |
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| T |
33352680 |
ttgatactctcgaaaaagattaactatggtaaaattattctttggaaaaataatgtaacaagaaatatgtgtgctcaatttattttaaggcctcttta-- |
33352583 |
T |
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| Q |
281 |
ctttaattatagatatgcaaaaccctacttttccgaaattgttgttgtgcgatgcctactagtctctgtgtcacagttcatccttgctgtgcaatgaagc |
380 |
Q |
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| T |
33352582 |
---------tagatatgcaaaaccctacttttccgaaattgttgttgtgcgatgcctactagtct--gtgtcacagttcatccttgctgtgcaatgaagc |
33352494 |
T |
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| Q |
381 |
gtggcaatataccccaaagacatcactatg--atatccttgtagaaagtctagcacgaccaatcaaccacatagt |
453 |
Q |
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| T |
33352493 |
gtggcaatataccccaaagacatcactatgatatatccttgtagaaagtctagcacgaccaatcaaccacatagt |
33352419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 33352777 - 33352728
Alignment:
| Q |
94 |
cattttcttcaattcaaagtataattggaaatcatgaacactcaattgat |
143 |
Q |
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| T |
33352777 |
cattttcttcaattcgaagtataattggaaatcatcaacactcaattgat |
33352728 |
T |
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