View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21562_low_17 (Length: 456)

Name: NF21562_low_17
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21562_low_17
NF21562_low_17
[»] chr4 (4 HSPs)
chr4 (19-440)||(13139814-13140250)
chr4 (230-264)||(21952507-21952541)
chr4 (230-264)||(42641737-42641771)
chr4 (227-264)||(51044563-51044600)
[»] chr7 (3 HSPs)
chr7 (383-440)||(11813469-11813526)
chr7 (379-437)||(34820723-34820781)
chr7 (230-264)||(46223176-46223210)
[»] chr5 (4 HSPs)
chr5 (379-440)||(30838251-30838312)
chr5 (388-437)||(14062730-14062779)
chr5 (203-264)||(13508437-13508498)
chr5 (203-264)||(21782673-21782734)
[»] chr8 (6 HSPs)
chr8 (388-438)||(21467507-21467557)
chr8 (379-435)||(26628995-26629051)
chr8 (383-435)||(45108605-45108657)
chr8 (381-440)||(23262833-23262892)
chr8 (379-440)||(13592881-13592942)
chr8 (407-440)||(26509558-26509591)
[»] chr2 (5 HSPs)
chr2 (390-437)||(31415112-31415159)
chr2 (378-437)||(18423649-18423707)
chr2 (382-435)||(13453844-13453897)
chr2 (382-427)||(22966923-22966968)
chr2 (388-428)||(34432392-34432432)
[»] chr6 (1 HSPs)
chr6 (381-435)||(31204698-31204752)
[»] chr1 (1 HSPs)
chr1 (390-435)||(35883504-35883549)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 440
Target Start/End: Original strand, 13139814 - 13140250
Alignment:
Q  19 aactgactctattgatgctgttttgcttgctccgcagggttttccgatgaaatgatggaactcgttgtgtttgctgttcgagatttgaggaagtcgttga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  13139814 aactgactctattgatgctgttttgcttgctccgcagggttttccgatgaaatgctggaactcgttgtgttcgctgttcgagatttgaggaagtcgttga 13139913  T
Q  119 aaggtcgtggttctaatctcatgattaagtttggtaatgctgagaatgtgatacaccagcttgcaactcaggtactttgttttatggcaatgtttggatg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13139914 aaggtcgtggttctaatctcatgattaagtttggtaatgctgagaatgtgatacaccagcttgcaactcaggtactttgttttatggcaatgtttggatg 13140013  T
Q  219 aatagcttagttaagtgtttatgcataagctatttccataacaaaatattc--nnnnnnnngttaaactgttttgagttttgacataag----------- 305  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||          ||||||||||||||||||||||||||||               
T  13140014 aatagcttagttaagtgttaatgcataagctatttccataaaaaaatattcaaaaaaaaaagttaaactgttttgagttttgacataagttataagctgt 13140113  T
Q  306 --ttataagctatattgaagagcctgtggaaatagattcaaaacagcttatggatgtgtcataagcnnnnnnnataaagaggattgatatttgtacaacc 403  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||    
T  13140114 ttttataagctatattgaagagcctgtggaaatagattcaaaacagcttatggatgtgtcataagctgttttcataaagaggagtgatatttgtacaacc 13140213  T
Q  404 aattttgtacgactcttgtgacaactacttttctcct 440  Q
    |||||||||| ||||||||||||||||||||||||||    
T  13140214 aattttgtacaactcttgtgacaactacttttctcct 13140250  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 21952507 - 21952541
Alignment:
Q  230 taagtgtttatgcataagctatttccataacaaaa 264  Q
    ||||||||||||||||||||||||| |||||||||    
T  21952507 taagtgtttatgcataagctatttctataacaaaa 21952541  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 42641771 - 42641737
Alignment:
Q  230 taagtgtttatgcataagctatttccataacaaaa 264  Q
    |||||||||||| ||||||||||||||||||||||    
T  42641771 taagtgtttatgtataagctatttccataacaaaa 42641737  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 51044600 - 51044563
Alignment:
Q  227 agttaagtgtttatgcataagctatttccataacaaaa 264  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  51044600 agttaagtgtttatgtataagctatttctataacaaaa 51044563  T

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Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 11813526 - 11813469
Alignment:
Q  383 aggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcct 440  Q
    |||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  11813526 aggagtgatatttgtacaaccaattttgtataactcttgtgacaactacttttctcct 11813469  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 437
Target Start/End: Complemental strand, 34820781 - 34820723
Alignment:
Q  379 aaagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttct 437  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||| ||||||||||    
T  34820781 aaagaggagtgatatttgcacaatcaattttgtacaactcttgtgacatctacttttct 34820723  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 46223210 - 46223176
Alignment:
Q  230 taagtgtttatgcataagctatttccataacaaaa 264  Q
    |||||||||||| ||||||||||||||||||||||    
T  46223210 taagtgtttatgtataagctatttccataacaaaa 46223176  T

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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 30838251 - 30838312
Alignment:
Q  379 aaagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcct 440  Q
    |||||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||    
T  30838251 aaagaggagtgatatttgtacagccaattttgtacaactcttgttacaactacttttctcct 30838312  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 437
Target Start/End: Original strand, 14062730 - 14062779
Alignment:
Q  388 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttct 437  Q
    |||||||| ||||||||||||||||| |||||| ||||||||||||||||    
T  14062730 tgatatttatacaaccaattttgtacaactcttatgacaactacttttct 14062779  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 13508437 - 13508498
Alignment:
Q  203 tggcaatgtttggatgaatagcttagttaagtgtttatgcataagctatttccataacaaaa 264  Q
    |||| |||||||||| || | |||| |||||||||||||  ||||||||||| |||||||||    
T  13508437 tggccatgtttggataaacaacttaattaagtgtttatgtttaagctatttctataacaaaa 13508498  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 21782734 - 21782673
Alignment:
Q  203 tggcaatgtttggatgaatagcttagttaagtgtttatgcataagctatttccataacaaaa 264  Q
    |||| |||||||||| || | |||| |||||||||||||  ||||||||||| |||||||||    
T  21782734 tggccatgtttggataaacaacttaattaagtgtttatgtttaagctatttctataacaaaa 21782673  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 21467557 - 21467507
Alignment:
Q  388 tgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctc 438  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  21467557 tgatatttgtacaaccaattttgtacaactcttgtgacaactatttttctc 21467507  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 26628995 - 26629051
Alignment:
Q  379 aaagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactactttt 435  Q
    |||||||| |||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  26628995 aaagaggagtgatatttgtacaaccaattttgtacaacatttgtgacaaccactttt 26629051  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 45108605 - 45108657
Alignment:
Q  383 aggattgatatttgtacaaccaattttgtacgactcttgtgacaactactttt 435  Q
    |||| |||||||||||||||||||||||||| |||||||||| || |||||||    
T  45108605 aggagtgatatttgtacaaccaattttgtacaactcttgtgataattactttt 45108657  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 440
Target Start/End: Complemental strand, 23262892 - 23262833
Alignment:
Q  381 agaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcct 440  Q
    |||||| |||||||| ||||||||||||||||| ||| |||||| ||||| |||||||||    
T  23262892 agaggagtgatatttttacaaccaattttgtacaacttttgtgataactatttttctcct 23262833  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 13592942 - 13592881
Alignment:
Q  379 aaagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttctcct 440  Q
    |||||||| ||||||||||||||  |||||||||||  ||||||||||| || |||||||||    
T  13592942 aaagaggagtgatatttgtacaataaattttgtacggttcttgtgacaattaattttctcct 13592881  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 440
Target Start/End: Complemental strand, 26509591 - 26509558
Alignment:
Q  407 tttgtacgactcttgtgacaactacttttctcct 440  Q
    ||||||| ||||||||||||||||||||||||||    
T  26509591 tttgtacaactcttgtgacaactacttttctcct 26509558  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 31415112 - 31415159
Alignment:
Q  390 atatttgtacaaccaattttgtacgactcttgtgacaactacttttct 437  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  31415112 atatttatacaaccaattttgtacaactcttgtgacaactacttttct 31415159  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 437
Target Start/End: Original strand, 18423649 - 18423707
Alignment:
Q  378 taaagaggattgatatttgtacaaccaattttgtacgactcttgtgacaactacttttct 437  Q
    |||||| || ||||||||||||  |||||||||||| |||||||||||||||||||||||    
T  18423649 taaagaagagtgatatttgtacg-ccaattttgtacaactcttgtgacaactacttttct 18423707  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 13453844 - 13453897
Alignment:
Q  382 gaggattgatatttgtacaaccaattttgtacgactcttgtgacaactactttt 435  Q
    ||||| |||||||||||||||||||||| ||| | | |||||||||| ||||||    
T  13453844 gaggagtgatatttgtacaaccaattttatacaatttttgtgacaaccactttt 13453897  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Complemental strand, 22966968 - 22966923
Alignment:
Q  382 gaggattgatatttgtacaaccaattttgtacgactcttgtgacaa 427  Q
    ||||| |||||||||||||||||||||||||| ||  |||||||||    
T  22966968 gaggagtgatatttgtacaaccaattttgtacaacctttgtgacaa 22966923  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 34432392 - 34432432
Alignment:
Q  388 tgatatttgtacaaccaattttgtacgactcttgtgacaac 428  Q
    |||||||||||||||||||||||||| ||| || |||||||    
T  34432392 tgatatttgtacaaccaattttgtacaacttttttgacaac 34432432  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 31204698 - 31204752
Alignment:
Q  381 agaggattgatatttgtacaaccaattttgtacgactcttgtgacaactactttt 435  Q
    |||||| |||||||||||||| ||||||||||| ||  |||||||||| ||||||    
T  31204698 agaggagtgatatttgtacaatcaattttgtacaacctttgtgacaaccactttt 31204752  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Original strand, 35883504 - 35883549
Alignment:
Q  390 atatttgtacaaccaattttgtacgactcttgtgacaactactttt 435  Q
    |||||||||||||||||||||||| ||  |||||||||| ||||||    
T  35883504 atatttgtacaaccaattttgtacaacctttgtgacaaccactttt 35883549  T

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