View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21562_low_2 (Length: 755)
Name: NF21562_low_2
Description: NF21562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21562_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 5e-58; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 433 - 551
Target Start/End: Complemental strand, 25754551 - 25754433
Alignment:
| Q |
433 |
tccccttgcttaggacccttacgaataaccacttgttttgtccgacaaccatttacgaaaaccaataatgacgctgaagcaaacatgctcacatccaccc |
532 |
Q |
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| T |
25754551 |
tccccttgcttaggacccttacgaataaccacttcttttgtccgacaaccatttacgaaaaccaataatgacgctgaagcaaacatgctcacatccaccc |
25754452 |
T |
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| Q |
533 |
cctccacttcccatcaaaa |
551 |
Q |
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| T |
25754451 |
cctccacttcccatcaaaa |
25754433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 137 - 288
Target Start/End: Complemental strand, 25771632 - 25771483
Alignment:
| Q |
137 |
ttaaattcaagttttgcaatgcaaatactgtgttcttagctcttctgtctaaattttcgctaaattcnnnnnnngctctttggacaagatatttgtcgct |
236 |
Q |
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| T |
25771632 |
ttaaattcaagttttgcaatgcaaataccgtgttctctgctcttctttctcaattttaactaaattctttttttgctctt-ggaca-gaaatttgttgct |
25771535 |
T |
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| Q |
237 |
gctctagatcatcgaactcgttgctaatgtgttgatgcaagatggaagatca |
288 |
Q |
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| T |
25771534 |
gctctagatcattgaactcgttgctaatgtgttgatgcaagatggatgatca |
25771483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 25761228 - 25761128
Alignment:
| Q |
235 |
ctgctctagatcatcgaactcgttgctaatgtgttgatgcaa-gatggaagatcaggtacatcatttcaagaagattaaaatctaaaaagagcatgcaat |
333 |
Q |
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| T |
25761228 |
ctgctcaagatcaatgaactcatttctaatgtgttgatgcaaagattgatgatcaggtacatcatttcgagaagattaaaatctaaaaagagcatgcaat |
25761129 |
T |
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| Q |
334 |
t |
334 |
Q |
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| T |
25761128 |
t |
25761128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 436 - 551
Target Start/End: Complemental strand, 25771117 - 25771001
Alignment:
| Q |
436 |
ccttgcttaggacccttacgaataaccacttgttttgtccgacaaccatttacgaaaaccaataatgacgctgaa-gcaaacatgctcacatccaccccc |
534 |
Q |
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|||| ||||||||||||||| |||||| ||| || ||| || |||||||| | |||| |||||||| || || ||| ||||||||| ||||||||| |
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| T |
25771117 |
cctttcttaggacccttacgtataaccgcttccttcgtcagataaccattttccaaaagtaataatgatcctaaaagcacacatgctcaaatccacccca |
25771018 |
T |
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| Q |
535 |
tccacttcccatcaaaa |
551 |
Q |
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| T |
25771017 |
tccacttcccatcaaaa |
25771001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 612 - 743
Target Start/End: Original strand, 35964279 - 35964410
Alignment:
| Q |
612 |
ccatgggcggagccatgtgttagtcagggtgttcaaatgaaccccctcaactccataagtttacactaaaaatctgtgttttattgactttgaatcccct |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35964279 |
ccatgggcggagccatgtgttagtcagggtgttcaaataaaccccctcaactctatatgtttacactaaaaatctgtattttattgactttgaatcccct |
35964378 |
T |
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| Q |
712 |
gaaatttgaatgttgaaccctttttgcaccta |
743 |
Q |
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| T |
35964379 |
gaaatttgaatgttgaaccatttttgcaccta |
35964410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 624 - 747
Target Start/End: Original strand, 45054546 - 45054669
Alignment:
| Q |
624 |
ccatgtgttagtcagggtgttcaaatgaaccccctcaactccataagtttacactaaaaatctgtgttttattgactttgaatcccctgaaatttgaatg |
723 |
Q |
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||||||||||||||| | ||| |||||||||||||||| | || |||||||||| ||| ||| |||||||||| || || || || |||||||||| |
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| T |
45054546 |
ccatgtgttagtcagaataatcatatgaaccccctcaactttacaaatttacactaataatatgtattttattgaccttaaaccctctaaaatttgaata |
45054645 |
T |
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| Q |
724 |
ttgaaccctttttgcacctatgct |
747 |
Q |
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| T |
45054646 |
ttgaaccctttttgcacctatgct |
45054669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 45302055 - 45302154
Alignment:
| Q |
239 |
tctagatcatcgaactcgttgctaatg----tgttgatgcaagatggaagatcaggtacatcatttcaagaagattaaaatctaaaaagagcatgcaatt |
334 |
Q |
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| T |
45302055 |
tctagatcatcaaactcgttgctaatgactgtgctgatacaaaatggatgataagatacatcatttcaagaagattaaaatctaaaaagagcatacaatt |
45302154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 45302173 - 45302221
Alignment:
| Q |
355 |
agacgtatctaaactcctctttcaataggcgttctttttcaagttcttc |
403 |
Q |
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|||| |||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
45302173 |
agacttatctaaactcctctttcaacaggctttctttttcaagttcttc |
45302221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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